Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2877

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11244 and 11245 are separated by 227 nucleotides11245 and 11246 are separated by 127 nucleotides mRNA_2876: 11244 - K18715 NUP159 nucleoporin NUP159, at 422,380 to 429,450 11244 mRNA_2877: 11245 - Hypothetical Protein, at 429,678 to 431,024 11245 mRNA_2878: 11246 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 431,152 to 434,004 11246

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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428,992 - +1.3
429,040 + -2.2
429,065 - -1.7
429,498 + -0.1
429,577 - +1.0
429,599 + -3.2
429,614 - -1.4
429,643 - -2.9
430,046 + 11245 mRNA_2877 0.27 -0.4
430,091 - 11245 mRNA_2877 0.31 -0.9
430,225 + 11245 mRNA_2877 0.41 +1.3
430,330 + 11245 mRNA_2877 0.48 -2.6
430,497 + 11245 mRNA_2877 0.61 -0.9
430,563 + 11245 mRNA_2877 0.66 -0.7
431,154 - -1.4
431,229 + -2.1
431,454 - 11246 mRNA_2878 0.11 -1.1
431,571 - 11246 mRNA_2878 0.15 -2.1
431,591 + 11246 mRNA_2878 0.15 -0.0
432,021 + 11246 mRNA_2878 0.30 -4.1

Or see this region's nucleotide sequence