Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2906

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11274 and 11275 are separated by 928 nucleotides mRNA_2906: 11274 - K02960 RP-S16e, RPS16 small subunit ribosomal protein S16e, at 508,633 to 509,349 11274 mRNA_2907: 11275 - HMMPfam-FAD dependent oxidoreductase-PF01266,SUPERFAMILY--SSF51971, at 510,278 to 512,745 11275

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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507,955 - -2.7
507,969 + +0.3
508,127 - -0.1
508,250 + -1.4
509,860 - +0.1
509,883 + -3.7
509,890 + -2.3
509,890 + +1.2
509,893 - +0.5
509,905 + -0.7
509,906 - -2.1
510,070 + -3.5
510,133 + -1.1
510,141 - -0.6
510,141 - -1.7
510,144 + -1.7
510,151 + -0.6
510,157 + -1.5
510,172 + -2.5
510,188 - -0.3
510,194 - +0.1
510,204 - -0.5
510,210 + -0.9
510,223 + -0.1
510,240 + -0.8
510,319 - -2.5
510,334 + -1.0
510,342 + -2.1

Or see this region's nucleotide sequence