Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2926

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11293 and 11294 are separated by 65 nucleotides11294 and 11295 are separated by 144 nucleotides mRNA_2925: 11293 - K03030 PSMD14, RPN11, POH1 26S proteasome regulatory subunit N11, at 570,849 to 571,975 11293 mRNA_2926: 11294 - Hypothetical Protein, at 572,041 to 573,157 11294 mRNA_2927: 11295 - K07955 ARL8 ADP-ribosylation factor-like protein 8, at 573,302 to 574,331 11295

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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571,975 + -1.3
571,986 + -0.8
572,295 + 11294 mRNA_2926 0.23 -1.0
572,436 + 11294 mRNA_2926 0.35 -0.2
572,444 - 11294 mRNA_2926 0.36 -0.8
572,570 + 11294 mRNA_2926 0.47 -1.6
572,581 - 11294 mRNA_2926 0.48 -1.1
572,865 - 11294 mRNA_2926 0.74 +2.5
572,876 + 11294 mRNA_2926 0.75 +0.3
572,884 + 11294 mRNA_2926 0.75 -0.7
572,952 + 11294 mRNA_2926 0.82 -0.8
572,957 - 11294 mRNA_2926 0.82 -0.5
573,184 + -0.0
573,193 - -1.2
573,198 + -0.9
573,364 + -2.1
573,366 - -2.4
573,451 + 11295 mRNA_2927 0.14 -2.8
573,458 + 11295 mRNA_2927 0.15 -1.2
573,460 + 11295 mRNA_2927 0.15 -2.1
573,660 - 11295 mRNA_2927 0.35 -2.5

Or see this region's nucleotide sequence