Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2952

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11319 and 11320 are separated by 555 nucleotides11320 and 11321 are separated by 72 nucleotides mRNA_2951: 11319 - Hypothetical Protein, at 634,900 to 635,986 11319 mRNA_2952: 11320 - Hypothetical Protein, at 636,542 to 638,719 11320 mRNA_2953: 11321 - Hypothetical Protein, at 638,792 to 639,757 11321

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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635,714 + 11319 mRNA_2951 0.75 -0.2
635,719 + 11319 mRNA_2951 0.75 +0.1
635,740 - 11319 mRNA_2951 0.77 -1.0
635,874 - 11319 mRNA_2951 0.90 -3.2
636,149 + -1.0
636,168 + -3.3
636,183 - -2.6
636,230 - -0.9
636,309 + -0.7
636,321 - -0.3
636,327 + -0.4
636,668 - -1.5
636,762 - 11320 mRNA_2952 0.10 -2.2
636,771 - 11320 mRNA_2952 0.11 -2.3
636,772 - 11320 mRNA_2952 0.11 -2.2
637,187 + 11320 mRNA_2952 0.30 -0.3
637,200 + 11320 mRNA_2952 0.30 -1.9
637,440 + 11320 mRNA_2952 0.41 -3.4
637,680 - 11320 mRNA_2952 0.52 +0.3
638,080 + 11320 mRNA_2952 0.71 -2.9
638,081 + 11320 mRNA_2952 0.71 -2.2
638,261 - 11320 mRNA_2952 0.79 -3.0
638,760 - -1.2
639,268 + 11321 mRNA_2953 0.49 -0.5
639,369 - 11321 mRNA_2953 0.60 -3.1
639,377 - 11321 mRNA_2953 0.61 -1.3
639,516 - 11321 mRNA_2953 0.75 -2.1
639,520 - 11321 mRNA_2953 0.75 -3.4
639,553 + 11321 mRNA_2953 0.79 -0.6
639,703 + -1.8

Or see this region's nucleotide sequence