Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2963

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11330 and 11331 are separated by 555 nucleotides mRNA_2962: 11330 - KOG3841 TEF-1 and related transcription factor, TEAD family, at 658,359 to 659,860 11330 mRNA_2963: 11331 - K01647 CS, gltA citrate synthase, at 660,416 to 662,957 11331

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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659,958 + -2.8
660,064 + -3.0
660,068 - -1.7
660,102 - -2.7
660,210 - +0.6
662,698 + 11331 mRNA_2963 0.90 -1.0
663,005 - -2.4
663,022 - -0.4
663,024 + -2.4
663,034 - -3.6
663,038 + -0.1
663,040 - -1.1
663,041 + -1.1
663,041 - -3.3
663,044 - -2.2
663,049 - -2.7
663,052 - -3.0
663,053 - -1.4
663,055 + -3.2
663,060 - -2.0
663,062 - -2.2
663,074 + -0.4
663,106 + -1.7
663,186 - -3.2
663,190 - +0.1
663,193 + -0.3
663,196 - -0.0
663,205 + -2.6
663,209 + -1.5
663,219 + +1.1
663,220 - -2.7
663,221 - -0.6
663,226 + +0.4
663,228 - -0.2
663,230 - -0.2
663,233 - -1.2
663,233 + -0.9
663,236 + -0.1
663,240 + -1.5
663,243 + +0.1
663,249 + -2.5
663,368 + -0.8
663,405 - +0.2
663,425 + -0.6
663,436 - -0.6
663,499 + -1.9
663,508 - -2.2
663,680 - -0.9
663,692 + -1.0
663,848 + -0.3

Or see this region's nucleotide sequence