Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2978

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11345 and 11346 are separated by 125 nucleotides11346 and 11347 overlap by 4 nucleotides mRNA_2977: 11345 - K05758 ARPC2 actin related protein 2/3 complex, subunit 2, at 697,458 to 698,969 11345 mRNA_2978: 11346 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 699,095 to 700,907 11346 mRNA_2979: 11347 - Hypothetical Protein, at 700,904 to 702,212 11347

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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699,011 + -2.4
699,167 + -3.0
699,187 + +0.3
699,300 - 11346 mRNA_2978 0.11 +0.1
699,305 - 11346 mRNA_2978 0.12 -2.3
699,305 - 11346 mRNA_2978 0.12 -2.7
699,342 - 11346 mRNA_2978 0.14 -2.0
699,375 + 11346 mRNA_2978 0.15 -0.2
699,460 - 11346 mRNA_2978 0.20 -2.7
699,478 - 11346 mRNA_2978 0.21 -2.0
699,481 - 11346 mRNA_2978 0.21 -0.1
699,487 + 11346 mRNA_2978 0.22 +1.6
699,617 - 11346 mRNA_2978 0.29 -1.1
699,804 - 11346 mRNA_2978 0.39 -0.7
699,822 - 11346 mRNA_2978 0.40 -0.0
700,062 + 11346 mRNA_2978 0.53 -1.1
700,083 + 11346 mRNA_2978 0.54 -0.7
700,299 + 11346 mRNA_2978 0.66 -1.5
700,398 + 11346 mRNA_2978 0.72 +0.7
700,469 - 11346 mRNA_2978 0.76 -3.1
700,470 - 11346 mRNA_2978 0.76 -2.5
700,470 - 11346 mRNA_2978 0.76 +0.0
700,478 - 11346 mRNA_2978 0.76 -2.3
700,581 - 11346 mRNA_2978 0.82 -2.7
700,607 - 11346 mRNA_2978 0.83 -1.0
700,611 + 11346 mRNA_2978 0.84 -0.4
700,611 + 11346 mRNA_2978 0.84 -2.9
700,619 - 11346 mRNA_2978 0.84 -2.8
700,800 - -0.4
700,827 + -2.3
700,907 + +0.9
700,908 + +0.2
700,922 + -1.5
700,924 - -4.1
701,072 - 11347 mRNA_2979 0.13 -1.4
701,222 + 11347 mRNA_2979 0.24 -3.6
701,276 - 11347 mRNA_2979 0.28 -0.8
701,406 + 11347 mRNA_2979 0.38 -0.7
701,457 - 11347 mRNA_2979 0.42 -0.2
701,468 - 11347 mRNA_2979 0.43 -1.2
701,468 - 11347 mRNA_2979 0.43 +0.5
701,471 - 11347 mRNA_2979 0.43 -0.1
701,503 - 11347 mRNA_2979 0.46 -0.1
701,511 - 11347 mRNA_2979 0.46 -0.9
701,517 + 11347 mRNA_2979 0.47 -0.1
701,517 - 11347 mRNA_2979 0.47 -2.0
701,597 - 11347 mRNA_2979 0.53 -1.1
701,602 - 11347 mRNA_2979 0.53 -2.5
701,617 + 11347 mRNA_2979 0.54 +1.0
701,656 - 11347 mRNA_2979 0.57 +0.9
701,665 - 11347 mRNA_2979 0.58 -0.8
701,668 - 11347 mRNA_2979 0.58 -1.4
701,697 - 11347 mRNA_2979 0.61 -0.6
701,738 - 11347 mRNA_2979 0.64 -0.6
701,765 - 11347 mRNA_2979 0.66 -0.9
701,822 - 11347 mRNA_2979 0.70 -0.7
701,823 - 11347 mRNA_2979 0.70 -0.1
701,871 - 11347 mRNA_2979 0.74 -1.8
701,892 + 11347 mRNA_2979 0.75 -3.0
701,906 - 11347 mRNA_2979 0.77 -2.0

Or see this region's nucleotide sequence