Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3025

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11392 and 11393 are separated by 520 nucleotides11393 and 11394 are separated by 664 nucleotides mRNA_3024: 11392 - K20366 ERGIC2, ERV41 endoplasmic reticulum-Golgi intermediate compartment protein 2, at 121,077 to 122,686 11392 mRNA_3025: 11393 - K11354 cph1 two-component system, chemotaxis family, sensor kinase Cph1, at 123,207 to 127,605 11393 mRNA_3026: 11394 - Hypothetical Protein, at 128,270 to 129,253 11394

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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122,423 + 11392 mRNA_3024 0.84 -2.0
122,474 + 11392 mRNA_3024 0.87 -1.0
122,561 + -1.4
122,615 + -0.6
122,615 + -0.5
122,669 - -1.5
122,902 + -0.6
122,918 - -1.5
122,921 + -2.6
123,047 - -1.6
123,060 - -2.4
123,071 + +0.5
123,072 + -1.5
123,194 - -2.1
123,384 + -0.1
123,385 + -0.7
123,403 + -0.5
123,413 + +0.6
123,687 - 11393 mRNA_3025 0.11 -0.9
123,806 + 11393 mRNA_3025 0.14 +1.1
123,811 + 11393 mRNA_3025 0.14 +0.5
124,050 - 11393 mRNA_3025 0.19 -3.8
124,070 + 11393 mRNA_3025 0.20 -1.9
124,073 + 11393 mRNA_3025 0.20 -2.9
124,078 + 11393 mRNA_3025 0.20 -0.8
124,152 + 11393 mRNA_3025 0.21 -2.8
124,255 + 11393 mRNA_3025 0.24 -0.0
124,299 - 11393 mRNA_3025 0.25 -0.0
124,812 + 11393 mRNA_3025 0.36 -1.5
124,830 + 11393 mRNA_3025 0.37 -0.4
124,833 + 11393 mRNA_3025 0.37 -2.4
125,102 + 11393 mRNA_3025 0.43 -1.7
125,146 + 11393 mRNA_3025 0.44 -1.7
125,538 - 11393 mRNA_3025 0.53 +0.0
125,561 - 11393 mRNA_3025 0.54 -1.2
125,660 + 11393 mRNA_3025 0.56 -1.7
125,973 - 11393 mRNA_3025 0.63 -1.0
125,973 - 11393 mRNA_3025 0.63 -1.4
126,264 - 11393 mRNA_3025 0.69 -0.5
126,378 + 11393 mRNA_3025 0.72 -0.8
126,540 - 11393 mRNA_3025 0.76 -4.0
126,601 - 11393 mRNA_3025 0.77 -2.0
126,676 - 11393 mRNA_3025 0.79 -0.7
126,682 - 11393 mRNA_3025 0.79 -0.8
126,751 + 11393 mRNA_3025 0.81 -1.6
126,818 - 11393 mRNA_3025 0.82 -0.8
126,876 - 11393 mRNA_3025 0.83 -3.0
126,947 + 11393 mRNA_3025 0.85 +0.5
126,994 + 11393 mRNA_3025 0.86 -0.8
127,111 + 11393 mRNA_3025 0.89 -1.9
127,134 - 11393 mRNA_3025 0.89 -1.9
127,152 - 11393 mRNA_3025 0.90 -1.1
127,162 + 11393 mRNA_3025 0.90 -1.3
127,314 - -3.2
127,707 + -1.0
127,718 + -0.8
127,744 + -1.5
127,809 + -1.0
127,854 + -1.1
127,855 - -2.5
128,204 + -1.0
128,430 - 11394 mRNA_3026 0.16 -2.5
128,464 + 11394 mRNA_3026 0.20 -2.6

Or see this region's nucleotide sequence