Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3058

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11425 and 11426 are separated by 300 nucleotides mRNA_3057: 11425 - K02216 CHK1 serine/threonine-protein kinase Chk1, at 212,271 to 214,660 11425 mRNA_3058: 11426 - Hypothetical Protein, at 214,961 to 216,563 11426

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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213,989 - 11425 mRNA_3057 0.72 -1.8
213,994 + 11425 mRNA_3057 0.72 -2.4
214,072 + 11425 mRNA_3057 0.75 -2.8
214,224 - 11425 mRNA_3057 0.82 -0.5
214,238 - 11425 mRNA_3057 0.82 -3.6
214,243 + 11425 mRNA_3057 0.83 -0.6
214,523 + -2.8
214,665 + -1.8
214,696 + -0.9
214,932 + -0.7
214,987 + -1.4
214,988 + -1.7
215,019 + -0.6
215,262 - 11426 mRNA_3058 0.19 -0.2
215,363 - 11426 mRNA_3058 0.25 -2.2
215,509 + 11426 mRNA_3058 0.34 -3.0
215,589 - 11426 mRNA_3058 0.39 +0.3
215,589 - 11426 mRNA_3058 0.39 +0.3
215,589 - 11426 mRNA_3058 0.39 -1.4
215,589 - 11426 mRNA_3058 0.39 +0.3
215,595 + 11426 mRNA_3058 0.40 -2.5
215,643 + 11426 mRNA_3058 0.43 -0.4
215,766 + 11426 mRNA_3058 0.50 -2.1
215,766 - 11426 mRNA_3058 0.50 -1.4
215,839 - 11426 mRNA_3058 0.55 +0.7
215,842 - 11426 mRNA_3058 0.55 -3.9
215,866 + 11426 mRNA_3058 0.56 -1.1
215,905 - 11426 mRNA_3058 0.59 -1.7
216,117 + 11426 mRNA_3058 0.72 +0.3
216,133 - 11426 mRNA_3058 0.73 +0.3
216,179 - 11426 mRNA_3058 0.76 +1.0
216,189 - 11426 mRNA_3058 0.77 -2.5
216,191 - 11426 mRNA_3058 0.77 +0.9
216,234 - 11426 mRNA_3058 0.79 -1.7
216,271 - 11426 mRNA_3058 0.82 +1.4
216,345 - 11426 mRNA_3058 0.86 -0.8
216,395 - 11426 mRNA_3058 0.89 +1.2
216,443 + -1.7
216,446 - -0.1
216,449 + -1.7
216,569 + -0.2
216,570 + -4.1
216,674 + -1.9
216,742 + -0.7
216,837 - -0.0
216,865 - -0.3
216,868 - -0.5
216,879 + -1.4
216,882 + -0.2
216,884 - +0.0
217,004 + -0.7
217,009 - -0.3
217,011 - -1.4
217,029 - -0.3
217,032 + +1.5
217,035 - -2.1
217,037 + +0.2
217,038 + -2.7
217,045 - -2.3
217,152 - +1.2
217,173 + -0.4
217,193 + +0.3
217,252 - -0.9
217,317 + -1.2
217,461 - -1.3
217,464 + -1.6
217,470 - +1.1
217,470 - -2.3
217,475 + -1.0

Or see this region's nucleotide sequence