Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3068

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11435 and 11436 are separated by 303 nucleotides11436 and 11437 are separated by 215 nucleotides mRNA_3067: 11435 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 235,279 to 236,676 11435 mRNA_3068: 11436 - K02434 gatB, PET112 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B, at 236,980 to 239,400 11436 mRNA_3069: 11437 - KOG2505 Ankyrin repeat protein, at 239,616 to 241,978 11437

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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235,987 - 11435 mRNA_3067 0.51 -0.7
236,002 - 11435 mRNA_3067 0.52 +0.1
236,005 + 11435 mRNA_3067 0.52 -3.0
236,525 - 11435 mRNA_3067 0.89 -3.0
236,631 - -0.2
236,681 - -3.4
236,692 - -1.2
236,706 + +1.1
236,726 - -1.4
236,848 - -3.3
236,853 + -2.9
236,971 - -0.9
236,973 + +0.8
236,975 - -0.0
237,304 - 11436 mRNA_3068 0.13 -1.5
237,434 - 11436 mRNA_3068 0.19 -0.9
237,434 + 11436 mRNA_3068 0.19 -2.1
237,438 - 11436 mRNA_3068 0.19 -0.6
237,544 - 11436 mRNA_3068 0.23 -0.4
237,574 - 11436 mRNA_3068 0.25 -1.9
237,693 + 11436 mRNA_3068 0.29 +1.2
237,700 + 11436 mRNA_3068 0.30 -3.7
237,831 + 11436 mRNA_3068 0.35 -2.4
237,905 + 11436 mRNA_3068 0.38 -2.8
237,910 + 11436 mRNA_3068 0.38 -1.3
238,011 + 11436 mRNA_3068 0.43 +1.0
238,024 + 11436 mRNA_3068 0.43 +1.4
238,033 + 11436 mRNA_3068 0.43 -3.1
238,152 - 11436 mRNA_3068 0.48 -0.5
238,444 - 11436 mRNA_3068 0.60 +0.5
238,572 - 11436 mRNA_3068 0.66 -2.1
238,592 - 11436 mRNA_3068 0.67 -1.7
238,599 + 11436 mRNA_3068 0.67 +1.1
238,667 + 11436 mRNA_3068 0.70 -0.6
238,754 + 11436 mRNA_3068 0.73 -0.2
239,052 - 11436 mRNA_3068 0.86 +0.0
239,159 - -1.3
239,177 + -1.1
239,178 + +0.2
239,181 - -3.0
239,184 - -1.2
239,200 + -1.8
239,206 - -1.4
239,208 - -1.2
239,209 + -0.7
239,211 + -1.4
239,318 + -0.8
239,321 + -1.6
239,335 - -3.2
239,347 - +0.3
239,353 + -0.6
239,365 + -1.3
239,369 - -1.3
239,372 + -1.6
239,474 - -3.2
239,487 - -3.7
239,496 + -0.9
239,496 + -0.4
239,511 + -1.9
239,516 + -0.0
239,521 - +0.1
239,632 - +1.6
239,671 + -1.0
239,671 + +0.1
239,830 + -2.3
239,919 - 11437 mRNA_3069 0.13 -2.2
239,973 + 11437 mRNA_3069 0.15 -0.7
240,355 - 11437 mRNA_3069 0.31 -1.2

Or see this region's nucleotide sequence