Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3071

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11439 and 11440 are separated by 976 nucleotides mRNA_3071: 11439 - Hypothetical Protein, at 245,578 to 247,225 11439 mRNA_3072: 11440 - KOG1203 Predicted dehydrogenase, at 248,202 to 249,247 11440

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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244,721 - -1.5
244,732 - -1.9
244,839 - -0.6
244,865 + +0.6
244,987 + -1.0
245,018 + -0.8
245,171 - -1.4
245,277 - +1.1
245,292 + -1.4
245,331 - +0.3
245,460 + -0.9
245,873 + 11439 mRNA_3071 0.18 -0.3
246,163 + 11439 mRNA_3071 0.35 +0.9
246,296 - 11439 mRNA_3071 0.44 +1.5
246,359 - 11439 mRNA_3071 0.47 -2.7
246,440 - 11439 mRNA_3071 0.52 -1.9
246,462 - 11439 mRNA_3071 0.54 -2.3
246,473 + 11439 mRNA_3071 0.54 -1.7
246,568 + 11439 mRNA_3071 0.60 -2.5
246,578 - 11439 mRNA_3071 0.61 -2.4
246,579 - 11439 mRNA_3071 0.61 -1.0
246,584 + 11439 mRNA_3071 0.61 -1.7
246,584 + 11439 mRNA_3071 0.61 -1.6
246,584 + 11439 mRNA_3071 0.61 -1.4
246,584 + 11439 mRNA_3071 0.61 -0.7
246,584 + 11439 mRNA_3071 0.61 -3.6
246,584 + 11439 mRNA_3071 0.61 -2.8
246,584 + 11439 mRNA_3071 0.61 -1.2
246,620 + 11439 mRNA_3071 0.63 -1.4
246,657 + 11439 mRNA_3071 0.65 -1.2
246,696 - 11439 mRNA_3071 0.68 -2.4
246,753 - 11439 mRNA_3071 0.71 -3.3
246,753 + 11439 mRNA_3071 0.71 -3.4
246,828 + 11439 mRNA_3071 0.76 -2.4
246,865 + 11439 mRNA_3071 0.78 -2.2
246,934 - 11439 mRNA_3071 0.82 -0.2
247,161 + -3.9
247,284 + -1.3
247,294 - +1.2
247,297 + -0.4
247,311 - -0.6
247,313 - -1.7
247,314 + -2.9
247,444 - +0.2
247,467 - -1.0
247,589 - +0.3
247,597 - -0.9
247,599 + +1.3
247,603 - -0.1
247,605 + -3.0
247,615 + -2.1
247,617 - -1.9
247,618 - -1.3
247,620 + +0.4
247,623 + -0.8
247,625 - -1.7
247,745 + -1.1
247,757 + -1.9
247,765 - -0.9
247,771 + -4.4
247,868 + +0.4
247,908 - -1.0
247,917 - +0.9
247,922 + -0.7
248,052 - +0.4
248,054 - -0.6
248,064 + -0.8
248,077 - -0.2

Or see this region's nucleotide sequence