Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3082

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11449 and 11450 are separated by 386 nucleotides mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274,779 to 278,054 11449 mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278,441 to 278,932 11450

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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277,595 + 11449 mRNA_3081 0.86 +0.8
277,644 + 11449 mRNA_3081 0.87 -3.6
277,673 + 11449 mRNA_3081 0.88 -2.0
277,681 - 11449 mRNA_3081 0.89 -2.6
277,797 + -2.3
277,797 - -1.2
277,824 + -1.0
277,835 - -1.4
277,836 + -2.6
277,842 + -0.9
277,933 - +0.5
277,960 - -1.3
277,981 + +0.9
277,985 + -2.1
278,083 - -0.7
278,105 - -1.6
278,108 + +0.0
278,135 - -1.8
278,138 + -1.7
278,246 - +0.0
278,263 - +0.6
278,264 - -2.5
278,293 + +0.2
278,402 + -1.3
278,557 - 11450 mRNA_3082 0.24 -2.4
278,558 - 11450 mRNA_3082 0.24 -3.4
278,565 + 11450 mRNA_3082 0.25 -1.5
278,568 - 11450 mRNA_3082 0.26 -1.6
278,704 + 11450 mRNA_3082 0.53 -1.7
278,871 + 11450 mRNA_3082 0.87 +0.1
278,986 - -0.6
278,990 - -2.7
279,127 - -0.7
279,146 + -1.1
279,147 + -2.7
279,149 + -1.2
279,160 + -2.0
279,335 + -2.7
279,423 + -2.6
279,427 + -0.6
279,433 - -0.1
279,447 - -2.1
279,452 + +0.5
279,458 + -0.7
279,482 + -2.3
279,566 - -1.6
279,570 + -2.3
279,573 + +0.8
279,577 + -0.1
279,579 - -3.1
279,596 - -4.2
279,600 + -0.9
279,611 + -1.5
279,629 + -1.6
279,696 + -2.5
279,703 + -2.0
279,735 + -0.3
279,741 + -0.7
279,749 - -0.8
279,754 - -1.5
279,756 - -3.1
279,768 - -2.4
279,786 - -1.9
279,837 + -2.2
279,847 - -1.3
279,853 - +0.8
279,870 - -0.7
279,874 - -0.8
279,874 - -0.0
279,877 + -1.3
279,881 - +0.6
279,892 + -1.5
279,894 + +0.1
279,896 - -1.2
279,904 + -2.4

Or see this region's nucleotide sequence