Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3083

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11451 and 11452 are separated by 123 nucleotides mRNA_3083: 11451 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 281,026 to 282,865 11451 mRNA_3084: 11452 - Hypothetical Protein, at 282,989 to 283,312 11452

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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280,042 - -0.4
280,045 + -0.6
280,046 + -0.2
280,053 + -1.2
280,122 + -4.4
280,142 + -2.2
280,143 - -0.4
280,146 + +2.8
280,149 - -0.9
280,149 - -1.3
280,160 + -1.6
280,161 - -2.7
280,163 - -0.6
280,166 - +0.6
280,166 - +0.1
280,169 - -1.1
280,173 + -2.8
280,175 + +0.1
280,178 - -2.3
280,179 - -2.1
280,180 + -0.4
280,182 - +1.6
280,185 + -0.6
280,188 + -0.6
280,190 - -3.0
280,193 - -0.3
280,207 - -0.5
280,213 - -1.7
280,330 - -2.0
280,331 + -2.3
280,344 - -0.9
280,357 + -2.3
280,419 + -0.9
280,462 - -1.8
280,463 - -0.0
280,481 - -2.2
280,495 + -0.2
280,496 + -0.2
280,509 + -1.6
280,624 - -0.1
280,632 + -3.4
280,638 - -0.1
280,668 + -0.9
280,749 + -2.6
280,769 + -0.4
280,795 + -2.2
280,834 + +0.4
280,955 - -4.5
280,959 - -2.6
280,964 + -0.0
281,058 + -1.7
281,065 - -3.1
281,077 - -1.0
281,204 + -1.3
281,356 + 11451 mRNA_3083 0.18 -2.6
281,372 + 11451 mRNA_3083 0.19 -0.5
281,442 - 11451 mRNA_3083 0.23 +0.4
281,490 + 11451 mRNA_3083 0.25 -0.6
281,522 - 11451 mRNA_3083 0.27 -1.1
281,564 - 11451 mRNA_3083 0.29 -2.2
281,628 - 11451 mRNA_3083 0.33 -2.0
281,634 - 11451 mRNA_3083 0.33 +0.5
281,659 + 11451 mRNA_3083 0.34 -2.1
281,662 + 11451 mRNA_3083 0.35 -0.2
281,690 + 11451 mRNA_3083 0.36 -3.1
281,833 - 11451 mRNA_3083 0.44 -3.3
281,850 - 11451 mRNA_3083 0.45 +1.6
281,880 - 11451 mRNA_3083 0.46 -1.5
281,883 - 11451 mRNA_3083 0.47 -0.0
281,900 - 11451 mRNA_3083 0.47 -0.1
281,907 - 11451 mRNA_3083 0.48 -1.0
281,919 + 11451 mRNA_3083 0.49 -0.0
281,919 - 11451 mRNA_3083 0.49 -0.5
281,921 + 11451 mRNA_3083 0.49 -1.1
281,940 + 11451 mRNA_3083 0.50 -1.4
281,970 - 11451 mRNA_3083 0.51 +0.0
281,987 - 11451 mRNA_3083 0.52 -1.5
282,014 + 11451 mRNA_3083 0.54 -4.1
282,020 - 11451 mRNA_3083 0.54 -0.1
282,021 - 11451 mRNA_3083 0.54 -1.8
282,021 + 11451 mRNA_3083 0.54 -2.2
282,024 - 11451 mRNA_3083 0.54 -1.1
282,026 - 11451 mRNA_3083 0.54 -0.4
282,026 + 11451 mRNA_3083 0.54 -0.0
282,035 - 11451 mRNA_3083 0.55 -3.2
282,037 - 11451 mRNA_3083 0.55 -1.9
282,041 - 11451 mRNA_3083 0.55 -0.6
282,042 + 11451 mRNA_3083 0.55 -2.3
282,045 - 11451 mRNA_3083 0.55 -1.4
282,050 + 11451 mRNA_3083 0.56 -1.0
282,059 + 11451 mRNA_3083 0.56 -1.6
282,071 - 11451 mRNA_3083 0.57 -0.2
282,072 - 11451 mRNA_3083 0.57 -2.5
282,079 - 11451 mRNA_3083 0.57 -0.6
282,082 + 11451 mRNA_3083 0.57 -1.9
282,085 - 11451 mRNA_3083 0.58 -1.9
282,087 - 11451 mRNA_3083 0.58 -1.5
282,087 + 11451 mRNA_3083 0.58 -2.1
282,088 + 11451 mRNA_3083 0.58 -0.4
282,089 - 11451 mRNA_3083 0.58 -1.7
282,093 + 11451 mRNA_3083 0.58 -3.7
282,093 + 11451 mRNA_3083 0.58 -3.0
282,100 - 11451 mRNA_3083 0.58 -1.3
282,101 + 11451 mRNA_3083 0.58 +0.3
282,106 + 11451 mRNA_3083 0.59 -1.8
282,109 + 11451 mRNA_3083 0.59 +0.6
282,117 + 11451 mRNA_3083 0.59 -1.2
282,132 - 11451 mRNA_3083 0.60 -2.8
282,136 + 11451 mRNA_3083 0.60 -1.8
282,136 + 11451 mRNA_3083 0.60 +1.4
282,137 - 11451 mRNA_3083 0.60 -0.7
282,142 + 11451 mRNA_3083 0.61 -0.2
282,143 + 11451 mRNA_3083 0.61 +0.2
282,145 - 11451 mRNA_3083 0.61 -0.1
282,168 - 11451 mRNA_3083 0.62 -2.3
282,169 - 11451 mRNA_3083 0.62 -0.1
282,187 - 11451 mRNA_3083 0.63 -2.5
282,201 - 11451 mRNA_3083 0.64 -3.6
282,209 - 11451 mRNA_3083 0.64 -1.5
282,233 - 11451 mRNA_3083 0.66 -2.2
282,241 + 11451 mRNA_3083 0.66 -0.5
282,251 - 11451 mRNA_3083 0.67 -0.4
282,260 - 11451 mRNA_3083 0.67 -0.6
282,338 - 11451 mRNA_3083 0.71 -3.3
282,338 + 11451 mRNA_3083 0.71 -2.2
282,340 + 11451 mRNA_3083 0.71 -0.1
282,359 + 11451 mRNA_3083 0.72 -0.5
282,367 - 11451 mRNA_3083 0.73 -2.7
282,367 - 11451 mRNA_3083 0.73 +0.1
282,379 - 11451 mRNA_3083 0.74 -2.2
282,379 - 11451 mRNA_3083 0.74 -1.0
282,385 + 11451 mRNA_3083 0.74 -3.3
282,392 + 11451 mRNA_3083 0.74 -2.5
282,411 + 11451 mRNA_3083 0.75 +1.3
282,412 + 11451 mRNA_3083 0.75 -0.6
282,412 + 11451 mRNA_3083 0.75 -0.1
282,418 + 11451 mRNA_3083 0.76 -3.3
282,419 + 11451 mRNA_3083 0.76 +0.3
282,424 + 11451 mRNA_3083 0.76 -1.6
282,424 + 11451 mRNA_3083 0.76 -2.3
282,429 - 11451 mRNA_3083 0.76 -1.8
282,452 + 11451 mRNA_3083 0.78 -3.7
282,456 + 11451 mRNA_3083 0.78 -1.4
282,457 + 11451 mRNA_3083 0.78 -3.6
282,469 + 11451 mRNA_3083 0.78 -1.3
282,482 + 11451 mRNA_3083 0.79 -1.5
282,486 - 11451 mRNA_3083 0.79 -0.9
282,540 - 11451 mRNA_3083 0.82 -2.7
282,545 - 11451 mRNA_3083 0.83 -3.5
282,552 + 11451 mRNA_3083 0.83 +0.8
282,601 + 11451 mRNA_3083 0.86 -2.8
282,616 - 11451 mRNA_3083 0.86 -1.8
282,634 + 11451 mRNA_3083 0.87 -0.1
282,642 - 11451 mRNA_3083 0.88 -2.9
282,681 - 11451 mRNA_3083 0.90 -2.2
282,694 + -1.1
282,707 - -2.6
282,709 - -1.4
282,709 + +0.1
282,712 - -0.0
282,713 + -1.3
282,718 - -0.9
282,733 - -2.8
282,758 + -0.2
282,761 + -2.7
282,779 + -1.3
282,784 + -1.4
282,861 - +0.1
282,864 - -1.9
282,866 - -2.7
282,906 - -0.6
282,909 + -0.8
282,947 - -2.1
282,953 + -2.1
282,962 - +0.0
282,968 + -0.5
282,995 + -0.3
283,012 - -0.4
283,022 + 11452 mRNA_3084 0.10 -1.0
283,043 - 11452 mRNA_3084 0.17 -3.2
283,073 + 11452 mRNA_3084 0.26 -1.8
283,099 + 11452 mRNA_3084 0.34 +1.6
283,099 + 11452 mRNA_3084 0.34 -0.8
283,102 - 11452 mRNA_3084 0.35 -2.9
283,114 + 11452 mRNA_3084 0.39 -2.4
283,149 + 11452 mRNA_3084 0.49 -2.1
283,241 - 11452 mRNA_3084 0.78 -2.5
283,251 - 11452 mRNA_3084 0.81 -0.4
283,252 + 11452 mRNA_3084 0.81 -0.3
283,271 + 11452 mRNA_3084 0.87 -2.6
283,272 + 11452 mRNA_3084 0.87 -1.6
283,419 - -2.2
283,531 + -2.9
283,534 + -0.3
283,545 + -0.8
283,545 + -2.8
283,547 - -0.8
283,563 + -1.6
283,580 + -3.5
283,710 + -0.5
283,826 - +0.5
283,827 + -0.3
283,844 + -1.4
283,854 + +1.3
283,858 + -2.1
283,858 + -2.8
283,860 - +0.2
283,861 + -1.5
283,863 - -4.5
283,864 + -1.8
283,865 + -1.1

Or see this region's nucleotide sequence