Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3088

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11455 and 11456 are separated by 192 nucleotides11456 and 11457 overlap by 8 nucleotides mRNA_3087: 11455 - HMMPfam-haloacid dehalogenase-like hydrolase-PF12710,SUPERFAMILY--SSF56784,TIGRFAM-HAD-SF-IB HAD phosphoserine phosphatase-like hydrolase, family IB-TIGR01488,TIGRFAM-DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase-TIGR01489, at 289,552 to 290,619 11455 mRNA_3088: 11456 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 290,812 to 293,862 11456 mRNA_3089: 11457 - BLAST Rho GTPase-activating protein 30 [Larimichthys crocea], at 293,855 to 294,427 11457

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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289,983 + 11455 mRNA_3087 0.40 -3.5
290,096 + 11455 mRNA_3087 0.51 +0.2
290,119 + 11455 mRNA_3087 0.53 -1.4
290,295 - 11455 mRNA_3087 0.70 -0.7
290,411 - 11455 mRNA_3087 0.80 -1.6
290,435 + 11455 mRNA_3087 0.83 -0.0
290,443 + 11455 mRNA_3087 0.83 -0.6
290,452 + 11455 mRNA_3087 0.84 +0.2
290,542 - -1.2
290,551 + -0.5
290,561 - -1.5
290,565 + -1.4
290,570 - -0.9
290,573 + -2.7
290,576 + -3.5
290,581 + +0.8
290,620 - -0.1
290,622 + -1.9
290,647 - -1.6
290,657 - -1.9
290,659 + -2.3
290,660 + -1.0
290,663 - -2.0
290,665 - -3.4
290,667 + -1.9
290,667 - -3.1
290,676 + -2.1
290,685 + -1.8
290,686 - -2.5
290,686 - -2.1
290,687 - +0.2
290,689 + -0.2
290,689 + -1.0
290,689 + -0.0
290,690 - +0.1
290,693 - -1.4
290,694 + -3.2
290,699 - -1.2
290,706 + -1.2
290,706 + -3.1
290,707 - -1.0
290,711 - -1.4
290,717 + -1.4
290,735 - -2.8
290,742 + -0.3
290,742 + -0.5
290,745 + -1.4
290,839 + -2.3
290,858 + -2.9
290,858 - -1.7
290,866 - -1.8
290,905 - -2.1
290,905 - -0.1
290,910 - -0.1
290,915 + -2.4
291,012 - -2.3
291,027 + -1.9
291,110 + -1.7
291,160 + 11456 mRNA_3088 0.11 -1.1
291,310 - 11456 mRNA_3088 0.16 +0.2
291,457 + 11456 mRNA_3088 0.21 -2.3
291,467 + 11456 mRNA_3088 0.21 +0.1
291,745 + 11456 mRNA_3088 0.31 -1.3
291,765 + 11456 mRNA_3088 0.31 -1.5
291,896 - 11456 mRNA_3088 0.36 -1.0
291,934 + 11456 mRNA_3088 0.37 -2.3
292,218 + 11456 mRNA_3088 0.46 -1.6
292,365 + 11456 mRNA_3088 0.51 -2.4
292,577 - 11456 mRNA_3088 0.58 -1.8
292,673 + 11456 mRNA_3088 0.61 -5.2
292,916 - 11456 mRNA_3088 0.69 -0.1
292,917 + 11456 mRNA_3088 0.69 +0.6
293,056 - 11456 mRNA_3088 0.74 -0.9
293,073 + 11456 mRNA_3088 0.74 +0.5
293,362 + 11456 mRNA_3088 0.84 -0.3
293,477 - 11456 mRNA_3088 0.87 -1.7
294,052 - 11457 mRNA_3089 0.34 -2.1
294,064 - 11457 mRNA_3089 0.36 +2.0
294,079 + 11457 mRNA_3089 0.39 -1.4
294,167 + 11457 mRNA_3089 0.54 -2.3
294,209 - 11457 mRNA_3089 0.62 +0.0
294,360 - 11457 mRNA_3089 0.88 +0.5
294,390 + -0.1
294,391 - -1.0
294,542 - -1.1
294,550 + +0.4
294,550 - +0.6
294,550 - -0.2
294,557 + -2.6
294,562 + -2.0
294,563 + +0.0
294,564 - -1.7
294,567 - -2.2
294,595 + -2.6
294,596 - -4.1
294,819 - -2.0
294,833 - -0.2
294,847 + +0.2

Or see this region's nucleotide sequence