Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3099

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11466 and 11467 are separated by 60 nucleotides mRNA_3098: 11466 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 312,938 to 315,396 11466 mRNA_3099: 11467 - Hypothetical Protein, at 315,457 to 316,238 11467

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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314,496 + 11466 mRNA_3098 0.63 -1.7
314,510 + 11466 mRNA_3098 0.64 -0.2
314,655 - 11466 mRNA_3098 0.70 -1.8
314,854 + 11466 mRNA_3098 0.78 -1.4
314,886 + 11466 mRNA_3098 0.79 -1.1
314,952 + 11466 mRNA_3098 0.82 -1.5
315,276 - -0.0
315,441 - -2.3
315,450 + +1.2
315,500 - -1.4
315,704 + 11467 mRNA_3099 0.32 -0.0
315,716 - 11467 mRNA_3099 0.33 -2.9
315,721 - 11467 mRNA_3099 0.34 -2.9
315,728 + 11467 mRNA_3099 0.35 -1.6
316,014 + 11467 mRNA_3099 0.71 -1.5
316,303 - -0.6
316,600 - +0.3
316,615 + -1.6
316,881 + +0.1
317,034 - -1.0
317,195 + -3.4

Or see this region's nucleotide sequence