Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3101

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11469 and 11470 are separated by 222 nucleotides mRNA_3101: 11469 - K01490 AMPD AMP deaminase, at 321,739 to 325,524 11469 mRNA_3102: 11470 - BLAST mannoprotein [Rhizoctonia solani AG-1 IA], at 325,747 to 328,243 11470

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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320,883 - -0.8
320,888 + +0.8
321,003 + -1.6
321,170 + -2.2
321,199 + +1.3
321,208 + -0.4
321,210 + +0.4
321,210 + -0.9
321,220 + -1.3
321,262 - -0.5
321,265 - -0.0
321,270 - -1.4
321,270 - +0.1
321,274 + -1.0
321,275 + -0.3
321,279 + -3.0
321,338 + -0.9
321,484 + -2.3
321,492 + -1.6
321,762 - -3.7
321,792 + -2.3
321,921 - -0.4
321,923 + -2.2
321,932 + -0.7
322,391 - 11469 mRNA_3101 0.17 -1.4
322,396 - 11469 mRNA_3101 0.17 -0.8
322,516 - 11469 mRNA_3101 0.21 -1.0
322,517 + 11469 mRNA_3101 0.21 -3.7
322,656 + 11469 mRNA_3101 0.24 +1.3
322,847 + 11469 mRNA_3101 0.29 -0.6
322,865 - 11469 mRNA_3101 0.30 +0.7
323,103 + 11469 mRNA_3101 0.36 -0.7
323,365 + 11469 mRNA_3101 0.43 -1.5
323,668 - 11469 mRNA_3101 0.51 -3.5
323,936 + 11469 mRNA_3101 0.58 -1.0
324,112 - 11469 mRNA_3101 0.63 -2.4
324,135 + 11469 mRNA_3101 0.63 -1.2
324,393 + 11469 mRNA_3101 0.70 -2.0
324,516 - 11469 mRNA_3101 0.73 -2.2
324,550 - 11469 mRNA_3101 0.74 +1.0
324,799 - 11469 mRNA_3101 0.81 -0.6
324,964 - 11469 mRNA_3101 0.85 -0.2
324,971 + 11469 mRNA_3101 0.85 -0.8
325,072 + 11469 mRNA_3101 0.88 -1.1
325,117 + 11469 mRNA_3101 0.89 -1.5
325,139 + 11469 mRNA_3101 0.90 -0.2
325,143 + 11469 mRNA_3101 0.90 -0.9
325,252 - -0.3
325,291 + -3.6
325,413 - -0.5
325,413 - -1.4
325,421 - -1.5
325,435 + -1.3
325,445 - -3.2
325,534 - -0.6
325,557 + -2.2
325,558 - -0.8
325,559 - -0.7
325,561 - -1.1
325,562 - +0.8
325,568 - -2.5
325,568 - -1.9
325,572 + -0.9
325,575 - -1.0
325,577 - -3.3
325,579 - -0.5
325,581 - -2.5
325,595 - -1.7
325,595 - -0.2
325,595 - +0.1
325,596 + -1.2
325,601 + -3.2
325,603 - -2.7
325,722 + -0.3
325,735 - -1.6
325,750 - -2.5
325,762 - +0.7
325,763 - -2.5
325,763 - +1.2
325,763 - -1.5
325,763 - -1.4
325,763 - +0.6
325,763 - -2.0
325,764 - -0.5
325,768 + -2.5
325,768 - -0.6
325,769 - -0.2
325,770 + -1.0
325,771 + -0.0
325,772 + -0.8
325,772 - +0.4
325,775 + -1.1
325,777 + -1.9
325,786 - -1.7
325,795 + -0.7
325,804 - +0.3
325,823 + -2.9
325,871 + -1.6
325,874 - -1.9
325,891 + -0.3
325,894 - +1.2
325,902 + -1.6
325,903 - +0.3
325,904 + -3.3
325,906 - +0.7
325,909 + -4.7
325,918 - -2.3
325,918 - -3.0
325,921 - -1.1
325,922 + -1.9
325,922 + -0.3
325,923 - -2.7
325,924 + -2.7
325,928 + +1.1
325,929 + -0.1
325,930 - -1.6
325,932 - -2.6
325,935 - -0.4
325,936 + -2.2
325,944 + +0.2
325,946 - -0.7
325,950 + -2.6
325,952 + -0.8
325,953 - -0.6
325,957 - -0.6
326,077 - 11470 mRNA_3102 0.13 +0.3
326,078 - 11470 mRNA_3102 0.13 +0.4
326,084 + 11470 mRNA_3102 0.13 -3.6
326,089 - 11470 mRNA_3102 0.14 -1.6
326,090 - 11470 mRNA_3102 0.14 -2.3
326,091 - 11470 mRNA_3102 0.14 -0.1
326,095 - 11470 mRNA_3102 0.14 -2.0
326,096 - 11470 mRNA_3102 0.14 -0.6
326,101 + 11470 mRNA_3102 0.14 -3.1
326,101 + 11470 mRNA_3102 0.14 -0.1
326,117 + 11470 mRNA_3102 0.15 -0.8
326,122 + 11470 mRNA_3102 0.15 -0.4
326,221 + 11470 mRNA_3102 0.19 -1.8
326,223 - 11470 mRNA_3102 0.19 -2.4
326,226 - 11470 mRNA_3102 0.19 -1.2
326,235 - 11470 mRNA_3102 0.20 -0.6
326,249 + 11470 mRNA_3102 0.20 -0.4
326,251 - 11470 mRNA_3102 0.20 -1.4
326,263 + 11470 mRNA_3102 0.21 -2.1
326,270 + 11470 mRNA_3102 0.21 -1.1
326,294 + 11470 mRNA_3102 0.22 -0.2
326,306 + 11470 mRNA_3102 0.22 -1.1
326,405 + 11470 mRNA_3102 0.26 -1.9
326,417 - 11470 mRNA_3102 0.27 +0.4
326,498 + 11470 mRNA_3102 0.30 +1.2
326,513 + 11470 mRNA_3102 0.31 -1.1

Or see this region's nucleotide sequence