Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3102

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11469 and 11470 are separated by 222 nucleotides11470 and 11471 are separated by 586 nucleotides mRNA_3101: 11469 - K01490 AMPD AMP deaminase, at 321,739 to 325,524 11469 mRNA_3102: 11470 - BLAST mannoprotein [Rhizoctonia solani AG-1 IA], at 325,747 to 328,243 11470 mRNA_3103: 11471 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 328,830 to 331,254 11471

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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324,799 - 11469 mRNA_3101 0.81 -0.6
324,964 - 11469 mRNA_3101 0.85 -0.2
324,971 + 11469 mRNA_3101 0.85 -0.8
325,072 + 11469 mRNA_3101 0.88 -1.1
325,117 + 11469 mRNA_3101 0.89 -1.5
325,139 + 11469 mRNA_3101 0.90 -0.2
325,143 + 11469 mRNA_3101 0.90 -0.9
325,252 - -0.3
325,291 + -3.6
325,413 - -0.5
325,413 - -1.4
325,421 - -1.5
325,435 + -1.3
325,445 - -3.2
325,534 - -0.6
325,557 + -2.2
325,558 - -0.8
325,559 - -0.7
325,561 - -1.1
325,562 - +0.8
325,568 - -2.5
325,568 - -1.9
325,572 + -0.9
325,575 - -1.0
325,577 - -3.3
325,579 - -0.5
325,581 - -2.5
325,595 - -1.7
325,595 - -0.2
325,595 - +0.1
325,596 + -1.2
325,601 + -3.2
325,603 - -2.7
325,722 + -0.3
325,735 - -1.6
325,750 - -2.5
325,762 - +0.7
325,763 - -2.5
325,763 - +1.2
325,763 - -1.5
325,763 - -1.4
325,763 - +0.6
325,763 - -2.0
325,764 - -0.5
325,768 + -2.5
325,768 - -0.6
325,769 - -0.2
325,770 + -1.0
325,771 + -0.0
325,772 + -0.8
325,772 - +0.4
325,775 + -1.1
325,777 + -1.9
325,786 - -1.7
325,795 + -0.7
325,804 - +0.3
325,823 + -2.9
325,871 + -1.6
325,874 - -1.9
325,891 + -0.3
325,894 - +1.2
325,902 + -1.6
325,903 - +0.3
325,904 + -3.3
325,906 - +0.7
325,909 + -4.7
325,918 - -2.3
325,918 - -3.0
325,921 - -1.1
325,922 + -1.9
325,922 + -0.3
325,923 - -2.7
325,924 + -2.7
325,928 + +1.1
325,929 + -0.1
325,930 - -1.6
325,932 - -2.6
325,935 - -0.4
325,936 + -2.2
325,944 + +0.2
325,946 - -0.7
325,950 + -2.6
325,952 + -0.8
325,953 - -0.6
325,957 - -0.6
326,077 - 11470 mRNA_3102 0.13 +0.3
326,078 - 11470 mRNA_3102 0.13 +0.4
326,084 + 11470 mRNA_3102 0.13 -3.6
326,089 - 11470 mRNA_3102 0.14 -1.6
326,090 - 11470 mRNA_3102 0.14 -2.3
326,091 - 11470 mRNA_3102 0.14 -0.1
326,095 - 11470 mRNA_3102 0.14 -2.0
326,096 - 11470 mRNA_3102 0.14 -0.6
326,101 + 11470 mRNA_3102 0.14 -3.1
326,101 + 11470 mRNA_3102 0.14 -0.1
326,117 + 11470 mRNA_3102 0.15 -0.8
326,122 + 11470 mRNA_3102 0.15 -0.4
326,221 + 11470 mRNA_3102 0.19 -1.8
326,223 - 11470 mRNA_3102 0.19 -2.4
326,226 - 11470 mRNA_3102 0.19 -1.2
326,235 - 11470 mRNA_3102 0.20 -0.6
326,249 + 11470 mRNA_3102 0.20 -0.4
326,251 - 11470 mRNA_3102 0.20 -1.4
326,263 + 11470 mRNA_3102 0.21 -2.1
326,270 + 11470 mRNA_3102 0.21 -1.1
326,294 + 11470 mRNA_3102 0.22 -0.2
326,306 + 11470 mRNA_3102 0.22 -1.1
326,405 + 11470 mRNA_3102 0.26 -1.9
326,417 - 11470 mRNA_3102 0.27 +0.4
326,498 + 11470 mRNA_3102 0.30 +1.2
326,513 + 11470 mRNA_3102 0.31 -1.1
326,554 - 11470 mRNA_3102 0.32 -1.1
326,562 + 11470 mRNA_3102 0.33 -1.7
326,585 + 11470 mRNA_3102 0.34 -0.6
326,810 - 11470 mRNA_3102 0.43 +0.0
326,832 + 11470 mRNA_3102 0.43 -0.3
326,835 + 11470 mRNA_3102 0.44 -0.9
326,851 + 11470 mRNA_3102 0.44 -2.7
326,855 - 11470 mRNA_3102 0.44 -0.5
326,903 - 11470 mRNA_3102 0.46 -0.3
326,988 - 11470 mRNA_3102 0.50 +0.1
326,994 + 11470 mRNA_3102 0.50 -0.2
327,138 - 11470 mRNA_3102 0.56 -1.9
327,164 + 11470 mRNA_3102 0.57 -0.3
327,165 - 11470 mRNA_3102 0.57 -0.4
327,273 - 11470 mRNA_3102 0.61 -0.5
327,434 - 11470 mRNA_3102 0.68 -0.6
327,602 + 11470 mRNA_3102 0.74 -0.9
327,713 - 11470 mRNA_3102 0.79 -1.3
327,728 - 11470 mRNA_3102 0.79 -3.4
327,759 - 11470 mRNA_3102 0.81 -2.6
327,831 + 11470 mRNA_3102 0.83 -0.7
327,869 - 11470 mRNA_3102 0.85 +2.7
327,876 - 11470 mRNA_3102 0.85 -4.0
328,304 - -2.4
328,318 - -2.0
328,320 - -2.9
328,341 + -1.3
328,457 + -3.2
328,496 + -0.2
328,548 - -1.1
328,864 + +1.0
328,932 + -0.9
328,998 - -2.2
329,099 - 11471 mRNA_3103 0.11 -2.3
329,100 + 11471 mRNA_3103 0.11 -0.3
329,100 + 11471 mRNA_3103 0.11 -0.7

Or see this region's nucleotide sequence