Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3106

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11473 and 11474 are separated by 151 nucleotides11474 and 11475 are separated by 396 nucleotides mRNA_3105: 11473 - KOG1515 Arylacetamide deacetylase, at 334,494 to 336,059 11473 mRNA_3106: 11474 - BLAST potential peroxisomal matrix Pex8 protein [Pseudo..., at 336,211 to 338,758 11474 mRNA_3107: 11475 - K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2, at 339,155 to 340,730 11475

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
335,744 + 11473 mRNA_3105 0.80 -0.6
335,862 - 11473 mRNA_3105 0.87 -2.8
336,033 + +0.3
336,033 - -0.3
336,034 - -0.6
336,036 + -1.3
336,061 - -0.7
336,077 + +0.2
336,140 - -0.9
336,147 - -1.1
336,159 - -3.0
336,161 - -0.6
336,170 - +0.4
336,173 + +0.8
336,175 - +0.5
336,178 + -1.7
336,187 - -1.3
336,190 + +0.0
336,198 + -0.5
336,205 - -1.5
336,205 + -0.5
336,312 - -0.2
336,323 + -1.6
336,327 + -3.5
336,329 + -2.8
336,341 - -1.1
336,345 + -1.0
336,457 - -0.9
336,459 + -1.3
336,481 - 11474 mRNA_3106 0.11 -1.1
336,485 + 11474 mRNA_3106 0.11 -1.0
336,491 - 11474 mRNA_3106 0.11 -1.3
336,634 - 11474 mRNA_3106 0.17 -1.1
336,639 + 11474 mRNA_3106 0.17 -1.7
336,648 - 11474 mRNA_3106 0.17 -2.1
336,649 - 11474 mRNA_3106 0.17 -2.3
336,775 + 11474 mRNA_3106 0.22 +0.9
336,787 - 11474 mRNA_3106 0.23 -2.4
336,935 + 11474 mRNA_3106 0.28 -1.2
337,067 - 11474 mRNA_3106 0.34 -0.9
337,070 - 11474 mRNA_3106 0.34 -1.7
337,070 - 11474 mRNA_3106 0.34 -0.9
337,192 - 11474 mRNA_3106 0.39 -1.8
337,232 + 11474 mRNA_3106 0.40 -1.7
337,614 + 11474 mRNA_3106 0.55 -0.4
337,654 - 11474 mRNA_3106 0.57 -0.7
337,833 + 11474 mRNA_3106 0.64 -0.8
337,956 - 11474 mRNA_3106 0.68 +0.6
337,958 + 11474 mRNA_3106 0.69 +0.5
337,961 + 11474 mRNA_3106 0.69 -0.9
338,104 - 11474 mRNA_3106 0.74 -2.4
338,269 + 11474 mRNA_3106 0.81 -0.0
338,282 - 11474 mRNA_3106 0.81 -0.7
338,289 + 11474 mRNA_3106 0.82 -2.2
338,382 - 11474 mRNA_3106 0.85 +0.1
338,568 - +0.5
338,572 - -1.0
338,691 - -0.9
338,702 - -0.1
338,704 + -1.1
338,729 + +0.7
338,811 + -2.0
338,850 - -0.0
339,011 + -1.9
339,016 - -1.1
339,021 - +0.5
339,152 - -1.5
339,300 + -2.0
339,310 + -1.0
339,565 - 11475 mRNA_3107 0.26 -1.8

Or see this region's nucleotide sequence