Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3110

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11477 and 11478 are separated by 153 nucleotides11478 and 11479 are separated by 276 nucleotides mRNA_3109: 11477 - K13172 SRRM2, SRM300 serine/arginine repetitive matrix protein 2, at 344,614 to 345,945 11477 mRNA_3110: 11478 - K14558 PWP2, UTP1 periodic tryptophan protein 2, at 346,099 to 349,205 11478 mRNA_3111: 11479 - K09788 prpF 2-methylaconitate isomerase, at 349,482 to 350,899 11479

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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345,141 - 11477 mRNA_3109 0.40 -0.8
345,142 + 11477 mRNA_3109 0.40 -1.5
345,165 + 11477 mRNA_3109 0.41 +0.1
345,306 - 11477 mRNA_3109 0.52 -4.1
345,430 - 11477 mRNA_3109 0.61 -1.7
345,438 + 11477 mRNA_3109 0.62 +0.4
345,473 - 11477 mRNA_3109 0.64 -0.5
345,581 + 11477 mRNA_3109 0.73 -0.9
345,621 + 11477 mRNA_3109 0.76 -0.1
345,914 - -1.9
346,065 + -0.1
346,186 + -1.6
346,189 - -2.6
346,432 + 11478 mRNA_3110 0.11 -2.9
346,452 - 11478 mRNA_3110 0.11 -1.1
346,597 + 11478 mRNA_3110 0.16 +0.1
346,618 - 11478 mRNA_3110 0.17 -4.5
346,666 - 11478 mRNA_3110 0.18 -1.2
346,700 - 11478 mRNA_3110 0.19 +0.6
346,757 + 11478 mRNA_3110 0.21 -0.1
346,772 + 11478 mRNA_3110 0.22 +0.3
346,798 - 11478 mRNA_3110 0.22 -2.2
347,070 + 11478 mRNA_3110 0.31 -1.7
347,081 - 11478 mRNA_3110 0.32 -3.0
347,342 + 11478 mRNA_3110 0.40 -0.3
347,359 - 11478 mRNA_3110 0.41 -1.9
347,366 + 11478 mRNA_3110 0.41 -2.8
347,369 - 11478 mRNA_3110 0.41 -2.3
347,598 + 11478 mRNA_3110 0.48 -0.9
347,612 + 11478 mRNA_3110 0.49 -1.3
347,748 + 11478 mRNA_3110 0.53 -1.6
347,837 + 11478 mRNA_3110 0.56 -0.2
347,937 + 11478 mRNA_3110 0.59 -2.2
348,088 - 11478 mRNA_3110 0.64 +0.8
348,109 + 11478 mRNA_3110 0.65 -0.2
348,179 - 11478 mRNA_3110 0.67 -1.1
348,257 + 11478 mRNA_3110 0.69 -1.5
348,527 - 11478 mRNA_3110 0.78 +1.0
348,545 + 11478 mRNA_3110 0.79 -1.1
348,708 + 11478 mRNA_3110 0.84 -2.1
348,714 + 11478 mRNA_3110 0.84 -3.0
348,991 + -2.3
348,994 - -1.8
349,093 - -2.5
349,126 - +0.3
349,139 + -0.0
349,279 + -0.8
349,282 - -0.2
349,284 - -2.6
349,306 - -1.3
349,428 - -0.9
349,442 - -3.1
349,450 - +0.4
349,468 + -1.8
349,565 - -0.3
349,590 - -2.8
349,597 + -0.7
349,650 - 11479 mRNA_3111 0.12 -1.8
349,872 - 11479 mRNA_3111 0.28 -1.7
350,002 - 11479 mRNA_3111 0.37 -0.7
350,009 + 11479 mRNA_3111 0.37 -1.5
350,032 + 11479 mRNA_3111 0.39 -0.6
350,158 - 11479 mRNA_3111 0.48 -2.6

Or see this region's nucleotide sequence