Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3139

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11506 and 11507 are separated by 240 nucleotides11507 and 11508 are separated by 509 nucleotides mRNA_3138: 11506 - K13106 BUD13, CWC26 pre-mRNA-splicing factor CWC26, at 408,830 to 410,030 11506 mRNA_3139: 11507 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 410,271 to 410,837 11507 mRNA_3140: 11508 - BLAST peptide release factor [Melanopsichium pennsylvanicum 4], at 411,347 to 412,227 11508

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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409,418 + 11506 mRNA_3138 0.49 -0.8
409,533 - 11506 mRNA_3138 0.59 -2.0
409,674 - 11506 mRNA_3138 0.70 -0.7
409,714 - 11506 mRNA_3138 0.74 -0.9
409,887 + 11506 mRNA_3138 0.88 -1.0
409,919 + -2.8
409,981 + -1.4
409,982 - -0.5
410,015 - -2.0
410,053 - -1.5
410,116 + -0.8
410,149 + -3.0
410,325 + +0.1
410,342 + 11507 mRNA_3139 0.13 -2.0
410,423 - 11507 mRNA_3139 0.27 -1.5
410,460 + 11507 mRNA_3139 0.33 -2.4
410,477 - 11507 mRNA_3139 0.36 -0.4
410,560 + 11507 mRNA_3139 0.51 +0.2
410,576 + 11507 mRNA_3139 0.54 +1.6
410,576 + 11507 mRNA_3139 0.54 -1.4
410,587 + 11507 mRNA_3139 0.56 -2.2
410,593 + 11507 mRNA_3139 0.57 -0.6
410,644 - 11507 mRNA_3139 0.66 -1.8
410,720 + 11507 mRNA_3139 0.79 -0.2
410,758 - 11507 mRNA_3139 0.86 -2.6
410,795 + -1.0
410,798 - -0.4
410,855 + -1.8
410,860 - -1.5
410,866 - -1.9
410,927 + -3.6
410,955 - -0.7
410,963 - +0.2
410,978 - -0.6
410,998 + +0.3
411,007 + -2.0
411,012 - -1.0
411,019 + -3.3
411,021 + -1.9
411,021 + -0.6
411,032 - -3.4
411,045 - -1.0
411,076 + -0.6
411,102 + +0.2
411,118 - +0.5
411,122 - +0.0
411,130 - -3.7
411,141 + -3.4
411,147 + -0.7
411,147 + +0.3
411,155 - -0.8
411,156 - -2.1
411,157 + -1.7
411,163 - -0.0
411,165 - -0.9
411,166 + -1.2
411,168 - -0.4
411,175 + -2.0
411,178 - -1.7
411,180 - -3.4
411,183 + -1.8
411,192 + -0.4
411,193 - -1.1
411,194 - -3.3
411,211 - -0.1
411,218 - +0.0
411,218 - -0.5
411,220 + -2.3
411,231 + -2.3
411,232 - -2.5
411,236 + +0.6
411,237 + -0.1
411,238 + -2.2
411,261 + -2.7
411,262 + -0.2
411,274 + -0.6
411,275 + -3.4
411,276 + -0.8
411,293 - -1.2
411,293 + +0.2
411,295 + -3.6
411,301 - -1.1
411,303 + -3.2
411,310 + -0.7
411,317 - -1.3
411,333 + -2.5
411,381 - -0.6
411,394 + -0.7
411,422 - -1.1
411,435 - 11508 mRNA_3140 0.10 -1.7
411,435 - 11508 mRNA_3140 0.10 -3.8
411,436 + 11508 mRNA_3140 0.10 -1.3
411,437 + 11508 mRNA_3140 0.10 -0.8
411,449 - 11508 mRNA_3140 0.12 -1.8
411,454 + 11508 mRNA_3140 0.12 -0.3
411,588 - 11508 mRNA_3140 0.27 -1.7
411,595 - 11508 mRNA_3140 0.28 -0.9
411,745 + 11508 mRNA_3140 0.45 -4.2
411,770 - 11508 mRNA_3140 0.48 -0.6
411,815 + 11508 mRNA_3140 0.53 -2.1

Or see this region's nucleotide sequence