Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3142

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11510 and 11511 are separated by 81 nucleotides mRNA_3142: 11510 - K14663 NTA1 protein N-terminal amidase, at 414,641 to 415,857 11510 mRNA_3143: 11511 - K10133 TP53I3 tumor protein p53-inducible protein 3, at 415,939 to 417,358 11511

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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413,743 + -0.1
413,838 - -1.2
413,845 + -0.9
414,131 + -1.7
414,259 - -2.7
414,265 - -0.1
414,390 - -0.3
414,391 + -0.0
414,394 - -2.5
414,402 + +0.2
414,411 - -0.4
414,417 + -1.9
414,431 + -0.6
414,437 + +0.4
414,438 - -0.4
414,442 - -1.8
414,444 - -1.3
414,480 - -2.0
414,488 + +0.6
414,488 + -0.3
414,493 + -0.5
414,501 - +1.1
414,509 + -0.6
414,529 - -0.8
414,529 - +0.4
414,529 - -1.3
414,558 - -2.0
414,571 - +1.5
414,571 + -1.0
414,571 - -0.6
414,578 + -1.7
414,578 + -1.0
414,578 + -3.7
414,580 - -1.8
414,581 + +0.9
414,583 - +0.9
414,590 - -2.7
414,603 + -1.7
414,610 - -0.8
414,613 - -1.2
414,616 + -0.5
414,736 + -2.2
414,760 - -1.6
414,825 + 11510 mRNA_3142 0.15 -2.9
414,864 + 11510 mRNA_3142 0.18 -2.0
414,890 - 11510 mRNA_3142 0.20 -2.4
414,902 + 11510 mRNA_3142 0.21 -2.2
414,926 - 11510 mRNA_3142 0.23 -1.9
414,927 + 11510 mRNA_3142 0.24 -2.9
415,016 - 11510 mRNA_3142 0.31 -0.8
415,147 - 11510 mRNA_3142 0.42 -1.6
415,170 + 11510 mRNA_3142 0.43 -1.5
415,188 - 11510 mRNA_3142 0.45 -1.4
415,281 - 11510 mRNA_3142 0.53 -2.0
415,295 - 11510 mRNA_3142 0.54 -1.3
415,456 - 11510 mRNA_3142 0.67 -2.5
415,535 - 11510 mRNA_3142 0.73 +0.9
415,629 - 11510 mRNA_3142 0.81 -0.8
415,642 + 11510 mRNA_3142 0.82 -1.5
415,643 + 11510 mRNA_3142 0.82 -0.8
415,657 + 11510 mRNA_3142 0.83 -1.8
415,701 - 11510 mRNA_3142 0.87 +0.1
415,794 - -1.4
415,796 - -0.5
415,830 - -0.6
415,861 + -1.0
415,909 + -3.4
415,935 - -2.4
416,077 + -1.7
416,364 + 11511 mRNA_3143 0.30 -3.5
416,495 - 11511 mRNA_3143 0.39 -0.3
416,634 - 11511 mRNA_3143 0.49 -1.8
416,758 - 11511 mRNA_3143 0.58 -2.9
416,791 + 11511 mRNA_3143 0.60 -1.7
416,807 + 11511 mRNA_3143 0.61 +0.1

Or see this region's nucleotide sequence