Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3155

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11523 and 11524 are separated by 619 nucleotides mRNA_3155: 11523 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550, at 443,800 to 447,457 11523 mRNA_3156: 11524 - K12662 PRPF4, PRP4 U4/U6 small nuclear ribonucleoprotein PRP4, at 448,077 to 450,028 11524

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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442,807 + -3.3
442,808 + +0.1
442,843 - -2.0
442,850 - -1.3
442,919 - -0.4
442,963 + -0.7
442,970 + -0.2
442,984 - +0.8
442,984 - -0.3
442,995 - -0.3
442,997 - +0.2
442,997 - -0.6
443,002 + -0.7
443,003 - -0.2
443,011 - -0.1
443,015 + -0.9
443,022 + -0.4
443,026 - -1.7
443,030 + -0.5
443,033 - -2.4
443,049 + -0.6
443,051 - -0.9
443,052 - -1.4
443,052 - -0.7
443,054 - +0.1
443,055 + -0.4
443,058 - -2.2
443,058 + -3.2
443,058 + -1.6
443,062 + -2.2
443,064 + -0.1
443,069 - -1.4
443,069 - -2.4
443,073 - -0.7
443,073 - -0.4
443,078 - -0.3
443,083 - -1.4
443,087 - -2.5
443,090 + -1.1
443,090 + -4.4
443,092 - -1.1
443,096 - -2.4
443,096 - +1.6
443,097 + -1.7
443,099 + -1.8
443,102 - -0.3
443,105 + -2.2
443,106 - -0.8
443,108 - -0.2
443,109 + -1.6
443,109 + -1.5
443,112 - -2.1
443,112 - +0.9
443,113 - +0.0
443,114 - -1.1
443,115 - -1.2
443,118 - -0.1
443,120 - -2.2
443,121 + -1.6
443,123 - +1.5
443,125 - -1.5
443,126 - -0.2
443,128 - -0.2
443,129 - -1.4
443,130 + -0.7
443,131 + -0.9
443,135 + +0.1
443,135 - -1.1
443,135 + +0.5
443,136 + -2.4
443,136 - -1.5
443,136 + -1.1
443,138 + -1.3
443,138 - -0.7
443,139 + -2.5
443,143 - -0.8
443,143 + -2.6
443,145 - -1.4
443,150 + -2.9
443,166 + -0.3
443,195 - -1.0
443,200 + -0.5
443,201 + -0.8
443,203 - -0.2
443,206 - -2.9
443,211 - +0.1
443,211 - -0.8
443,211 + -3.9
443,214 + -3.8
443,215 - -0.1
443,220 - -0.4
443,222 - -1.9
443,222 + -3.3
443,222 - -0.8
443,222 + -2.3
443,223 - -0.2
443,228 - -0.7
443,233 - +2.0
443,236 - -1.7
443,236 - +1.3
443,238 + +0.8
443,238 - -0.5
443,240 + -2.5
443,241 + -0.8
443,242 + +0.0
443,245 - -1.5
443,245 - -0.1
443,246 + -0.7
443,247 + -2.0
443,248 + +0.1
443,249 + +0.2
443,251 + +1.2
443,253 + -1.6
443,257 + -1.1
443,257 + -0.8
443,257 + -1.3
443,262 - -2.5
443,264 - +1.0
443,264 + -1.1
443,266 - -2.4
443,268 + +0.4
443,268 + -1.3
443,273 + -1.8
443,282 - +0.7
443,283 + -1.1
443,289 + -2.5
443,297 + -1.8
443,300 - -1.1
443,300 - -1.2
443,367 - -1.5
443,379 + -0.6
443,397 + -2.3
443,408 + +0.4
443,409 + -0.2
443,411 - -1.9
443,414 + -1.1
443,415 - -1.3
443,416 + -1.6
443,416 - -2.0
443,418 + -2.1
443,420 - -2.1
443,420 - -0.2
443,424 - -1.2
443,428 - -2.3
443,430 - -2.3
443,430 - -0.6
443,430 + -2.0
443,436 + -0.5
443,436 + -2.1
443,439 + -3.2
443,470 + -3.2
443,559 - -2.1
443,573 - -0.6
443,574 - -0.2
443,574 + -0.9
443,575 + -3.0
443,588 - -0.7
443,592 + +0.2
443,593 + -1.7
443,594 - -1.3
443,594 + -3.4
443,599 + -3.1
443,718 - -0.5
443,718 - -2.7
443,728 - -3.0
443,729 + -4.4
443,733 - -2.4
443,734 + -1.4
443,735 + -1.6
443,739 + -0.5
443,745 + -0.0
443,749 - -2.0
443,750 + -2.1
443,755 + -1.9
443,755 + -2.0
443,760 - -1.7
443,760 - -0.8
443,775 + -1.9
443,881 + -0.9
443,883 + +0.1
443,883 + -4.3
443,883 + -2.4
443,889 - -0.3
443,893 + -0.2
443,895 + -2.1
443,897 + -0.9
443,901 - -2.3
443,901 + +0.1
443,902 + -1.2
443,904 + -2.2
443,910 + -3.0
443,918 - -2.3
444,074 + -1.6
444,168 + 11523 mRNA_3155 0.10 -2.3
444,170 - 11523 mRNA_3155 0.10 -3.9
444,175 - 11523 mRNA_3155 0.10 -2.8
444,176 + 11523 mRNA_3155 0.10 -3.3
444,198 + 11523 mRNA_3155 0.11 -2.7
444,473 + 11523 mRNA_3155 0.18 -2.2
444,480 + 11523 mRNA_3155 0.19 -0.8
444,564 + 11523 mRNA_3155 0.21 -1.8
444,767 + 11523 mRNA_3155 0.26 -1.3
445,122 + 11523 mRNA_3155 0.36 -2.6
445,173 + 11523 mRNA_3155 0.38 -1.3
445,364 + 11523 mRNA_3155 0.43 -2.3
445,402 + 11523 mRNA_3155 0.44 -2.4
445,493 + 11523 mRNA_3155 0.46 -0.7
445,539 + 11523 mRNA_3155 0.48 -2.5
445,624 + 11523 mRNA_3155 0.50 -2.8
445,649 + 11523 mRNA_3155 0.51 -1.2
445,725 - 11523 mRNA_3155 0.53 -1.1
445,767 - 11523 mRNA_3155 0.54 +0.2
445,799 - 11523 mRNA_3155 0.55 -2.5
445,948 + 11523 mRNA_3155 0.59 -1.3
446,124 + 11523 mRNA_3155 0.64 -0.9
446,403 + 11523 mRNA_3155 0.71 -0.5
446,482 + 11523 mRNA_3155 0.73 -0.7
446,954 - 11523 mRNA_3155 0.86 -1.4
446,962 - 11523 mRNA_3155 0.86 -1.3
447,082 - 11523 mRNA_3155 0.90 -3.0
447,257 - -1.5
447,543 + -0.9
447,554 - -3.9
447,555 + -2.6
447,558 + -1.2
447,679 - -2.2
447,838 + -2.5
447,846 - -2.4
447,850 - -2.2
447,854 - -2.8
448,004 + +0.2
448,019 - +0.5
448,140 + -3.1
448,146 - -0.1
448,162 + +1.8
448,165 + -1.1
448,175 + -1.3
448,230 + -0.8
448,286 - 11524 mRNA_3156 0.11 -2.4
448,303 - 11524 mRNA_3156 0.12 -2.1
448,308 - 11524 mRNA_3156 0.12 -2.0
448,436 + 11524 mRNA_3156 0.18 -1.0

Or see this region's nucleotide sequence