Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
12 + +0.3
12 + +0.0
15 + -1.2
16 + -1.1
18 + -1.6
22 + -2.1
25 + -2.1
57 - -0.4
61 - -0.0
62 + -4.8
62 + -1.9
66 + -0.1
72 + -2.8
72 + -2.2
72 + -4.0
75 + -3.3
78 - -1.5
105 + -1.9
110 - -0.2
114 + -0.4
115 + -1.4
118 + -2.5
122 + -2.3
122 - -4.0
124 + -3.3
135 + -0.6
147 + -1.5
157 + +0.1
161 + +0.9
168 + -2.0
174 + -1.6
177 - -2.6
228 + +0.9
247 + -0.9
252 - -0.9
253 - -1.2
255 + -0.7
258 + -2.9
264 - -0.8
269 + -0.6
269 - -1.2
274 + +0.4
275 - -1.7
277 + -0.2
280 + -1.4
280 + -0.5
283 - -1.0
285 - -1.1
287 + -1.7
287 + -0.8
288 + -4.1
292 - -2.9
293 + -2.2
298 + -0.8
305 - +0.2
314 + -1.3
320 + -1.0
368 + -3.0
370 - -2.2
372 + -0.8
382 + +1.6
384 + -0.9
391 + +1.1
391 - -0.6
397 + -2.7
397 - +0.3
402 + -2.7
405 + -1.8
423 - -4.0
430 + -3.0
440 + -1.5
446 + -1.7
470 + -1.0
524 + +0.3
532 + -1.0
545 - -2.6
557 + -1.8
569 + -2.1
570 - -0.0
583 + -1.1
584 + -2.1
603 - -1.6
603 + -3.1
634 - 11537 mRNA_3169 0.11 -2.4
636 + 11537 mRNA_3169 0.11 +0.6
646 + 11537 mRNA_3169 0.12 -1.2
661 + 11537 mRNA_3169 0.13 -4.2
667 + 11537 mRNA_3169 0.14 -1.6
698 + 11537 mRNA_3169 0.17 -1.1
704 - 11537 mRNA_3169 0.18 -2.1
705 - 11537 mRNA_3169 0.18 -1.8
721 - 11537 mRNA_3169 0.19 -1.0
725 + 11537 mRNA_3169 0.20 -1.4
738 - 11537 mRNA_3169 0.21 -3.3
849 + 11537 mRNA_3169 0.32 -1.2
871 + 11537 mRNA_3169 0.34 +0.4
883 + 11537 mRNA_3169 0.35 +0.1
894 + 11537 mRNA_3169 0.37 -2.6
895 + 11537 mRNA_3169 0.37 -3.3
922 + 11537 mRNA_3169 0.39 +1.7
965 - 11537 mRNA_3169 0.44 +0.5
1,012 - 11537 mRNA_3169 0.48 -1.8
1,026 + 11537 mRNA_3169 0.50 -0.4
1,026 + 11537 mRNA_3169 0.50 -1.3
1,105 + 11537 mRNA_3169 0.58 -1.0
1,123 + 11537 mRNA_3169 0.60 -0.3
1,141 + 11537 mRNA_3169 0.61 -2.3
1,142 + 11537 mRNA_3169 0.61 -0.0
1,165 + 11537 mRNA_3169 0.64 +0.3
1,174 - 11537 mRNA_3169 0.65 -0.9
1,174 + 11537 mRNA_3169 0.65 -2.5
1,259 + 11537 mRNA_3169 0.73 -1.5
1,265 + 11537 mRNA_3169 0.74 +0.1
1,268 + 11537 mRNA_3169 0.74 -0.4
1,269 - 11537 mRNA_3169 0.74 +0.4
1,288 - 11537 mRNA_3169 0.76 -1.4
1,297 + 11537 mRNA_3169 0.77 -2.2
1,303 - 11537 mRNA_3169 0.78 -0.4
1,399 + 11537 mRNA_3169 0.87 -2.6
1,412 - 11537 mRNA_3169 0.88 -1.6
1,419 - 11537 mRNA_3169 0.89 -0.9
1,423 - 11537 mRNA_3169 0.90 -2.4
1,429 - -1.9
1,453 + -2.8
1,459 + -1.8
1,459 + -0.2
1,460 - -2.3
1,461 + -0.7
1,462 + -3.3
1,467 + -2.6
1,470 - -1.0
1,474 - -0.6
1,485 + -0.6
1,520 + -1.0
1,523 + -2.5
1,531 - +0.3
1,537 + -0.5
1,541 + -0.5
1,562 + -3.5
1,567 + -0.9
1,572 + -1.4
1,582 - -0.9
1,584 - -1.9
1,589 + -2.5
1,596 - -1.2
1,601 - -1.2
1,602 + -4.2
1,605 + -1.1
1,609 + -1.9
1,616 + -1.1
1,636 + -0.4
1,654 + -2.1
1,656 - -0.9
1,666 + -0.6
1,675 - +0.8
1,682 - -2.0
1,697 - +0.0
1,709 + -2.2
1,709 - -1.9
1,711 + -1.8
1,718 - -2.0
1,719 + -1.3
1,722 - -0.2
1,723 + -0.9
1,725 - -2.8
1,725 - -1.0
1,727 + -2.6
1,730 + -0.4
1,731 + +1.2
1,732 + -3.7
1,732 + -3.3
1,734 + +0.3
1,734 + -0.4
1,734 + -0.0
1,739 - -3.3
1,740 + -0.1
1,744 - -3.1
1,747 + -3.3
1,749 + -1.2
1,759 + -1.0
1,759 + -0.0
1,759 + -1.3
1,761 + -0.2
1,763 + -0.6
1,765 + -2.3
1,767 + -3.7
1,769 + +0.1
1,772 + -1.6
1,772 + -1.5
1,774 + -2.0
1,774 + +0.2
1,775 + -2.4
1,776 - +1.6
1,776 + +0.8
1,777 + -2.1
1,778 + -2.9
1,778 - -1.7
1,781 - -0.4
1,783 - +0.9
1,783 - -3.6
1,783 - -1.3
1,783 - -0.4
1,784 + -2.6
1,789 + -1.5
1,789 - -0.1
1,791 + -0.6
1,792 + -1.2
1,793 + -1.9
1,795 + -2.3
1,796 + -0.3
1,796 - -1.1
1,798 + -2.3
1,800 + -2.0
1,801 + +0.0
1,805 + -1.0
1,805 + -1.8
1,807 + -2.1
1,813 - -1.8
1,814 + -0.1
1,814 + -0.9
1,818 - -3.5
1,851 - -1.4
1,874 + -0.8
1,881 - -1.2
1,885 - -0.9
1,891 - -0.8
1,896 - -1.4
1,912 + -1.4
1,912 + +0.1
1,914 - -1.8
1,916 - -1.9
1,917 - -0.2
1,919 + -0.7
1,922 - -1.8
1,923 - -0.2
1,934 - -1.0
1,935 + +0.0
1,938 - -1.7
1,938 - -0.9
1,940 - -3.1
1,941 + -0.7
1,941 + -0.9
1,942 + -2.8
1,943 - -0.7
1,944 + -0.1
1,944 - -3.9
1,945 - -1.0
1,945 + -1.0
1,946 - +0.4
1,947 + -0.6
1,960 - -0.2
1,968 + -2.5
1,980 + -1.5
2,015 + -0.2
2,067 - -3.1
2,081 - -2.0
2,091 + +2.0
2,220 + -2.5
2,229 - -0.4
2,235 - -2.3
2,237 - +0.0
2,242 + -1.9
2,242 - -0.6
2,245 - -2.5
2,248 - -2.5
2,251 + -0.3
2,254 - -1.1
2,261 + -1.8
2,262 - -0.8
2,266 + -3.0
2,268 + -3.1
2,400 + 11538 mRNA_3170 0.21 -1.1
2,401 - 11538 mRNA_3170 0.21 -0.4
2,404 + 11538 mRNA_3170 0.22 -0.9
2,414 + 11538 mRNA_3170 0.23 -1.2
2,420 - 11538 mRNA_3170 0.23 -2.1
2,439 + 11538 mRNA_3170 0.25 -0.9
2,446 + 11538 mRNA_3170 0.26 -0.6
2,470 - 11538 mRNA_3170 0.28 -1.4
2,516 - 11538 mRNA_3170 0.32 -0.7

Or see this region's nucleotide sequence