Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3182

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11549 and 11550 are separated by 476 nucleotides11550 and 11551 are separated by 231 nucleotides mRNA_3181: 11549 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 30,988 to 32,695 11549 mRNA_3182: 11550 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 33,172 to 34,723 11550 mRNA_3183: 11551 - HMMPfam-Cohesin loading factor-PF10345, at 34,955 to 37,755 11551

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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32,444 + 11549 mRNA_3181 0.85 -0.5
32,630 - -1.1
32,646 - -0.8
32,777 + -2.5
32,780 - -2.7
32,912 + -2.4
32,929 + -1.9
32,933 - -3.0
32,985 - -0.9
32,996 + -1.4
32,999 + -3.3
33,009 - -1.6
33,011 + -0.0
33,092 - +0.2
33,150 - -1.7
33,315 - -0.7
33,325 + +0.8
33,326 + -1.0
33,328 - 11550 mRNA_3182 0.10 -0.4
33,329 + 11550 mRNA_3182 0.10 -2.2
33,422 + 11550 mRNA_3182 0.16 -0.6
33,422 + 11550 mRNA_3182 0.16 -1.5
33,424 - 11550 mRNA_3182 0.16 +0.4
33,590 + 11550 mRNA_3182 0.27 -1.2
33,593 - 11550 mRNA_3182 0.27 -1.8
33,596 - 11550 mRNA_3182 0.27 -2.2
33,602 + 11550 mRNA_3182 0.28 +0.1
33,602 + 11550 mRNA_3182 0.28 -1.7
33,623 + 11550 mRNA_3182 0.29 -0.4
33,691 + 11550 mRNA_3182 0.33 -2.4
33,691 + 11550 mRNA_3182 0.33 -1.9
33,729 + 11550 mRNA_3182 0.36 -1.9
33,731 + 11550 mRNA_3182 0.36 -0.7
33,870 + 11550 mRNA_3182 0.45 -2.3
33,885 + 11550 mRNA_3182 0.46 -2.5
34,039 + 11550 mRNA_3182 0.56 -3.2
34,047 - 11550 mRNA_3182 0.56 -2.3
34,155 - 11550 mRNA_3182 0.63 +0.2
34,161 + 11550 mRNA_3182 0.64 -3.3
34,172 - 11550 mRNA_3182 0.64 -3.7
34,274 + 11550 mRNA_3182 0.71 -1.0
34,342 - 11550 mRNA_3182 0.75 +1.1
34,466 + 11550 mRNA_3182 0.83 -3.5
34,477 + 11550 mRNA_3182 0.84 -3.2
34,486 + 11550 mRNA_3182 0.85 -1.0
34,631 - -2.3
34,756 - -3.2
34,778 - -1.8
34,877 - -2.7
34,900 + -2.4
35,010 - -1.0
35,376 - 11551 mRNA_3183 0.15 -1.5

Or see this region's nucleotide sequence