Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3284

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11651 and 11652 are separated by 128 nucleotides11652 and 11653 are separated by 620 nucleotides mRNA_3283: 11651 - K20224 IPO9, RANBP9 importin-9, at 287,035 to 291,052 11651 mRNA_3284: 11652 - BLAST something about silencing, SAS, complex subunit 4 [Rh..., at 291,181 to 293,324 11652 mRNA_3285: 11653 - KOG2069 Golgi transport complex subunit, at 293,945 to 296,560 11653

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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291,082 - -0.8
291,168 + +0.2
291,456 + 11652 mRNA_3284 0.13 +0.7
291,504 + 11652 mRNA_3284 0.15 +0.2
291,893 + 11652 mRNA_3284 0.33 +1.2
292,061 + 11652 mRNA_3284 0.41 -1.8
292,066 + 11652 mRNA_3284 0.41 -2.7
292,345 + 11652 mRNA_3284 0.54 +0.1
292,477 + 11652 mRNA_3284 0.60 +0.3
293,408 + -1.3
293,444 + -0.3
293,557 - -2.0
293,590 - -3.3
293,594 + +1.0
293,706 - -4.2
293,822 - -1.2
293,834 - -0.6
294,135 - +0.5

Or see this region's nucleotide sequence