Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3292

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11659 and 11660 are separated by 584 nucleotides mRNA_3291: 11659 - BLAST expressed protein [Schizophyllum commune H4-8], at 308,905 to 310,428 11659 mRNA_3292: 11660 - KOG1339 Aspartyl protease, at 311,013 to 311,790 11660

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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310,115 + 11659 mRNA_3291 0.79 +0.1
310,116 + 11659 mRNA_3291 0.79 -2.7
310,273 - 11659 mRNA_3291 0.90 -1.7
310,292 - -0.8
310,569 - -0.7
310,578 - -1.6
310,594 - -3.7
310,598 - -1.8
310,629 + -0.0
310,629 - -0.5
310,652 - -0.8
310,654 - -0.9
310,655 + -1.5
310,669 - -1.2
310,677 - -2.5
310,706 - -0.9
310,710 - +0.4
310,710 - -1.9
310,748 + -1.8
310,991 - -2.1
311,141 + 11660 mRNA_3292 0.16 -2.7
311,291 - 11660 mRNA_3292 0.36 -0.9
311,294 - 11660 mRNA_3292 0.36 -1.7
311,300 + 11660 mRNA_3292 0.37 -0.2
311,405 - 11660 mRNA_3292 0.50 -1.0
311,468 - 11660 mRNA_3292 0.58 -1.3
311,574 - 11660 mRNA_3292 0.72 -0.5
311,620 + 11660 mRNA_3292 0.78 -1.9
311,632 - 11660 mRNA_3292 0.80 +0.3
311,648 - 11660 mRNA_3292 0.82 -0.3
311,732 - -0.1
311,740 + -1.3
311,755 - -1.3
311,755 + -0.9
311,759 + +0.8
311,764 - -2.2
311,764 - -2.0
311,765 + -1.2
311,772 + -2.4
311,773 - -1.6
311,774 - -2.6
311,775 - -0.0
311,775 - +1.2
311,777 - -1.1
311,777 + -0.3
311,778 + -1.0
311,781 - +0.2
311,781 - -3.1
311,783 + -2.6
311,894 - -2.4
311,956 + -3.1
312,247 + -2.1
312,259 + -0.9
312,304 - -1.6
312,306 - -3.3
312,308 + -1.9
312,308 + -2.5
312,314 - -1.7
312,314 - -0.1
312,316 - -1.1
312,319 - -1.7
312,321 + -0.3
312,341 + -0.4
312,341 + +2.5
312,345 + -0.7
312,351 + -2.8
312,353 - -2.7
312,354 - -0.5
312,355 - -1.8
312,361 + +0.1
312,381 + -3.2
312,393 - -3.5
312,408 - -3.3
312,428 + -3.0
312,456 - +0.6
312,460 - -1.8
312,474 - -0.2
312,482 - -0.3
312,485 - -1.4
312,490 - -0.8
312,493 - -0.9
312,716 + -0.4
312,716 + -2.2
312,753 + -2.5

Or see this region's nucleotide sequence