Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3301

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11668 and 11669 are separated by 253 nucleotides mRNA_3300: 11668 - HMMPfam-Amidohydrolase-PF13147,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 335,794 to 339,454 11668 mRNA_3301: 11669 - K08197 ARN MFS transporter, SIT family, siderophore-iron-H+ symporter, at 339,708 to 341,858 11669

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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338,744 + 11668 mRNA_3300 0.81 +0.2
338,907 + 11668 mRNA_3300 0.85 -1.3
339,030 - 11668 mRNA_3300 0.88 -0.6
339,037 + 11668 mRNA_3300 0.89 -1.6
339,178 - -1.6
339,189 - +0.0
339,204 + -3.9
339,208 - -2.2
339,215 + -1.3
339,331 + -2.9
339,338 + -1.7
339,350 + -2.0
339,362 + -3.4
339,416 + +0.2
339,484 - -0.7
339,513 + -0.6
339,521 - -0.3
339,533 + -0.8
339,539 - -2.3
339,550 + -3.1
339,554 + -3.1
339,557 + -1.7
339,648 + -0.9
339,649 + +1.1
339,659 - +1.3
339,670 - -1.2
339,676 + -1.3
339,872 + -0.2
339,891 - -1.0
339,909 + -0.9
339,927 + 11669 mRNA_3301 0.10 +0.3
339,956 - 11669 mRNA_3301 0.12 -0.3
339,971 - 11669 mRNA_3301 0.12 -2.0
340,046 - 11669 mRNA_3301 0.16 -0.0
340,096 + 11669 mRNA_3301 0.18 -1.8
340,215 - 11669 mRNA_3301 0.24 -1.5
340,350 + 11669 mRNA_3301 0.30 -2.0
340,490 - 11669 mRNA_3301 0.36 -0.4
340,724 + 11669 mRNA_3301 0.47 -2.6
340,859 - 11669 mRNA_3301 0.54 -1.5
340,947 + 11669 mRNA_3301 0.58 -0.8
340,958 + 11669 mRNA_3301 0.58 -1.3
340,985 + 11669 mRNA_3301 0.59 +0.0
341,001 + 11669 mRNA_3301 0.60 -0.2
341,029 - 11669 mRNA_3301 0.61 +0.3
341,032 + 11669 mRNA_3301 0.62 -0.2
341,114 - 11669 mRNA_3301 0.65 -0.4
341,136 - 11669 mRNA_3301 0.66 -0.6
341,419 + 11669 mRNA_3301 0.80 +0.5
341,462 + 11669 mRNA_3301 0.82 -1.9
341,701 + -1.3
341,705 + -1.1
341,820 - -4.3
341,851 - -3.3
341,853 + -1.9
341,880 - -0.5
341,898 - +1.2
341,915 - -1.2
342,026 + -1.9
342,032 + -2.7
342,052 + -0.6
342,059 - -0.3
342,059 - -1.0
342,060 + -2.5
342,064 + -2.9
342,066 + -1.6
342,068 - -0.5
342,069 - -0.1
342,071 + -2.4
342,074 - -1.5
342,074 - -0.9
342,077 - -2.6
342,081 - -3.2
342,089 + -0.4
342,095 + +0.1
342,099 + -2.9
342,101 - -2.1
342,108 + -0.2
342,116 - +0.3
342,117 - -0.6
342,149 - -1.8
342,157 + -2.0
342,165 + -3.3
342,166 + -0.9
342,176 - -1.8
342,179 - +2.1
342,193 - +1.7
342,201 + +0.3
342,205 + -2.7
342,206 + -1.7
342,210 - -1.8
342,215 + -2.9
342,218 - +0.3
342,219 + -2.3
342,231 + -0.5
342,232 + +0.4
342,268 + -0.2
342,271 + -2.8
342,291 - -0.9
342,310 + -2.4
342,310 + -1.1
342,312 + +0.8
342,328 + -3.4
342,336 - -1.5
342,340 - -1.8
342,384 + -2.0
342,414 + -0.9
342,421 - -1.3
342,423 - -2.1
342,440 - -1.0
342,446 - -1.8
342,463 - +0.2
342,563 + -1.2
342,588 - -1.4
342,704 - -1.2
342,713 + -0.2
342,768 + -1.5

Or see this region's nucleotide sequence