Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3308

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11675 and 11676 are separated by 786 nucleotides11676 and 11677 are separated by 603 nucleotides mRNA_3307: 11675 - K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit, at 355,687 to 356,880 11675 mRNA_3308: 11676 - KOG2533 Permease of the major facilitator superfamily, at 357,667 to 359,935 11676 mRNA_3309: 11677 - HMMPfam-Amidohydrolase family-PF01979,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 360,539 to 362,421 11677

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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356,755 - 11675 mRNA_3307 0.89 -1.9
356,888 - -3.4
356,897 - -1.4
356,904 - -2.4
356,914 + -0.5
356,915 - -3.4
357,040 + -1.9
357,044 - -0.9
357,074 + -1.8
357,192 + -2.2
357,196 - -2.6
357,204 + -1.1
357,343 - -0.6
357,790 + -0.3
358,233 - 11676 mRNA_3308 0.25 -0.5
358,271 + 11676 mRNA_3308 0.27 -2.4
358,712 + 11676 mRNA_3308 0.46 -0.6
359,243 - 11676 mRNA_3308 0.69 -2.3
359,396 - 11676 mRNA_3308 0.76 -2.1
359,427 + 11676 mRNA_3308 0.78 -1.5
359,430 - 11676 mRNA_3308 0.78 -1.2
359,848 + -1.1
359,853 - -1.6
359,857 - -1.4
360,014 - +0.1
360,017 + -0.1
360,057 - -1.6
360,103 + -1.5
360,115 - +0.2
360,117 - -1.4
360,132 + -1.4
360,136 - -3.0
360,136 + -2.5
360,136 - -2.8
360,140 - -3.2
360,143 - -0.1
360,147 + +1.1
360,153 + +0.2
360,164 + -3.1
360,165 - +0.1
360,169 - -0.9
360,170 - -0.6
360,182 + -0.6
360,182 + -0.4
360,197 + -0.7
360,203 - +0.6
360,217 + -2.1
360,356 + +0.1
360,370 - -4.5
360,371 + -0.3
360,378 + -2.6
360,395 - -1.2
360,398 + +0.1
360,413 + -2.2
360,426 - -1.1
360,426 - -0.8
360,427 - -1.8
360,428 + -2.6
360,428 - -2.5
360,432 - -0.5
360,433 - -1.2
360,434 - -0.9
360,437 + -1.0
360,437 - -2.0
360,437 - -1.8
360,440 + -1.2
360,446 + -2.5
360,447 - -0.9
360,448 - -2.5
360,454 - -1.9
360,461 + -0.6
360,463 - -1.5
360,466 - -1.9
360,471 + +0.6
360,471 + -0.5
360,475 - -1.2
360,486 + -1.4
360,489 + -0.7
360,507 + -3.3
360,563 - +0.9
360,608 - +0.1
360,609 - -1.6
360,612 - -1.8
360,637 - -0.2
360,751 - 11677 mRNA_3309 0.11 -2.2
360,763 + 11677 mRNA_3309 0.12 -3.4
360,911 + 11677 mRNA_3309 0.20 -4.0

Or see this region's nucleotide sequence