Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3313

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11681 and 11682 are separated by 179 nucleotides mRNA_3313: 11681 - K00030 IDH3 isocitrate dehydrogenase (NAD+), at 369,892 to 372,180 11681 mRNA_3314: 11682 - K00030 IDH3 isocitrate dehydrogenase (NAD+), at 372,360 to 374,414 11682

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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369,016 + -2.6
369,139 + -0.0
369,155 - -0.1
369,287 - -3.1
369,290 - -2.5
369,306 + -1.9
369,307 + -1.5
369,467 + -2.0
369,493 - -0.5
369,626 - -0.4
369,766 - -2.2
371,015 + 11681 mRNA_3313 0.49 -2.5
371,963 + +1.7
372,276 + -2.7
372,282 + -3.4
372,283 + -0.0
372,298 + -1.7

Or see this region's nucleotide sequence