Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3346

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11713 and 11714 are separated by 271 nucleotides mRNA_3345: 11713 - Hypothetical Protein, at 436,771 to 439,819 11713 mRNA_3346: 11714 - K19844 BEM2 GTPase-activating protein BEM2, at 440,091 to 443,147 11714

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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439,202 + 11713 mRNA_3345 0.80 -3.6
439,206 + 11713 mRNA_3345 0.80 +0.2
439,210 - 11713 mRNA_3345 0.80 -2.7
439,669 + -2.0
440,206 - +1.1
440,257 - +0.3
440,368 - -0.5
440,395 - -2.4
440,653 - 11714 mRNA_3346 0.18 -3.0
440,681 - 11714 mRNA_3346 0.19 -2.6
441,217 - 11714 mRNA_3346 0.37 -1.6
441,705 + 11714 mRNA_3346 0.53 -2.6
441,839 - 11714 mRNA_3346 0.57 +0.6
441,980 - 11714 mRNA_3346 0.62 -0.4
442,443 + 11714 mRNA_3346 0.77 +0.0
442,702 - 11714 mRNA_3346 0.85 -1.1
442,732 - 11714 mRNA_3346 0.86 -0.7
442,771 + 11714 mRNA_3346 0.88 -2.3
442,888 - -0.9
443,054 + -2.6
443,193 - -2.5
443,199 - -1.8
443,205 - -0.3
443,333 - -0.0

Or see this region's nucleotide sequence