Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3347

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11715 and 11716 are separated by 624 nucleotides mRNA_3347: 11715 - PRINTS-Proline rich extensin signature-PR01217, at 444,755 to 446,622 11715 mRNA_3348: 11716 - K09831 ERG5, CYP61A sterol 22-desaturase, at 447,247 to 449,563 11716

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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444,539 + +0.4
444,630 + -3.1
444,731 + -2.1
444,900 - -3.0
445,509 + 11715 mRNA_3347 0.40 -1.6
445,955 - 11715 mRNA_3347 0.64 -1.0
446,229 + 11715 mRNA_3347 0.79 -0.4
446,855 + -0.8

Or see this region's nucleotide sequence