Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3359

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11727 and 11728 are separated by 398 nucleotides mRNA_3359: 11727 - Hypothetical Protein, at 492,217 to 492,797 11727 mRNA_3360: 11728 - KOG4836 Uncharacterized conserved protein, at 493,196 to 494,520 11728

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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491,410 + -1.2
491,675 + +0.4
491,836 - -0.0
491,878 + -3.7
491,917 - -0.4
491,918 - -0.4
492,110 - -0.3
492,229 - -0.5
492,243 - -1.7
492,307 + 11727 mRNA_3359 0.15 -2.2
492,323 + 11727 mRNA_3359 0.18 -1.2
492,339 + 11727 mRNA_3359 0.21 -2.9
492,805 + -0.1
493,077 + -1.2
493,444 - 11728 mRNA_3360 0.19 +0.2
493,688 - 11728 mRNA_3360 0.37 -1.5

Or see this region's nucleotide sequence