Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3383

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11750 and 11751 are separated by 264 nucleotides mRNA_3382: 11750 - HMMPfam-Vaculolar membrane protein-PF12400,PRINTS-Proline rich extensin signature-PR01217, at 546,099 to 548,480 11750 mRNA_3383: 11751 - HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383, at 548,745 to 549,848 11751

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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547,759 - 11750 mRNA_3382 0.70 -1.9
548,294 - -1.5
548,607 - -1.4
548,632 - -2.1
548,761 + -1.1
548,773 + -3.7
549,240 + 11751 mRNA_3383 0.45 -4.5
549,749 + -2.9
549,785 - -1.6
549,808 - -1.5
550,202 + -1.0
550,220 + -1.3
550,686 - -1.6
550,802 + -2.7
550,805 + -2.5
550,806 - -0.9
550,813 + -0.3
550,824 - -0.7
550,834 + -1.6
550,839 + -1.2

Or see this region's nucleotide sequence