Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3384

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_3384: 11752 - K00963 UGP2, galU, galF UTP--glucose-1-phosphate uridylyltransferase, at 550,974 to 553,438 11752

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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550,202 + -1.0
550,220 + -1.3
550,686 - -1.6
550,802 + -2.7
550,805 + -2.5
550,806 - -0.9
550,813 + -0.3
550,824 - -0.7
550,834 + -1.6
550,839 + -1.2
550,858 + -0.3
553,560 + -0.5
554,046 + +0.2
554,060 + -0.1
554,186 + -0.7
554,333 + -0.7
554,339 - -1.5
554,345 - -1.9
554,345 + -0.5
554,346 + -2.3
554,347 + -0.9
554,351 - -1.5
554,361 + -2.1
554,362 + +0.1
554,369 - -0.4
554,389 - -1.8
554,390 + +0.0
554,400 - +0.0

Or see this region's nucleotide sequence