Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3429

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11796 and 11797 are separated by 679 nucleotides mRNA_3428: 11796 - Hypothetical Protein, at 72,925 to 76,768 11796 mRNA_3429: 11797 - K06636 SMC1 structural maintenance of chromosome 1, at 77,448 to 78,675 11797

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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76,505 - -1.7
76,514 - -1.2
76,527 - +2.0
76,667 + -3.0
76,701 + -1.1
76,712 + +2.5
76,788 - -2.3
76,822 + -0.6
76,837 - -2.2
76,838 - -0.6
76,857 - -2.7
76,858 + -4.0
76,969 + +0.7
76,980 + -2.0
77,005 + +0.7
77,008 - -1.6
77,009 + -1.4
77,018 - -0.8
77,045 + -0.6
77,047 - +1.2
77,085 + -2.5
77,105 + -1.3
77,233 - -3.3
77,238 + -1.6
77,244 + -1.7
77,247 + -2.4
77,292 - -0.1
77,404 - -0.6
77,414 - -1.9
77,434 + -0.4
77,438 + -2.9

Or see this region's nucleotide sequence