Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3444

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11811 and 11812 are separated by 222 nucleotides11812 and 11813 are separated by 843 nucleotides mRNA_3443: 11811 - K06694 PSMD10 26S proteasome non-ATPase regulatory subunit 10, at 116,448 to 118,253 11811 mRNA_3444: 11812 - Hypothetical Protein, at 118,476 to 119,519 11812 mRNA_3445: 11813 - HMMPfam-BRO1-like domain-PF03097,ProSiteProfiles-BRO1 domain profile.-PS51180,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SMART-BRO1-like domain-SM01041, at 120,363 to 121,884 11813

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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117,818 + 11811 mRNA_3443 0.76 -2.2
118,094 - +0.2
118,108 + +0.4
118,241 + -3.3
118,587 + 11812 mRNA_3444 0.11 -3.4
118,691 + 11812 mRNA_3444 0.21 -1.0
118,817 + 11812 mRNA_3444 0.33 -0.7
118,832 - 11812 mRNA_3444 0.34 -2.7
119,125 - 11812 mRNA_3444 0.62 -0.2
119,154 - 11812 mRNA_3444 0.65 -0.4
119,578 - -1.2
119,579 + -0.1
119,601 + -0.5
119,736 + +0.2
119,904 - -3.0
120,034 - -0.6

Or see this region's nucleotide sequence