Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3503

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11870 and 11871 are separated by 404 nucleotides mRNA_3502: 11870 - Hypothetical Protein, at 250,882 to 251,460 11870 mRNA_3503: 11871 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 251,865 to 254,204 11871

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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251,080 + 11870 mRNA_3502 0.34 -0.4
251,513 + -1.6
251,519 - -0.8
251,530 - -1.8
251,644 - +0.3
251,652 + +1.2
251,682 + -2.5
251,774 - -1.0
251,989 - -3.2
252,403 + 11871 mRNA_3503 0.23 -4.0
252,430 + 11871 mRNA_3503 0.24 -1.9
252,683 + 11871 mRNA_3503 0.35 -1.7
252,733 - 11871 mRNA_3503 0.37 -1.2
253,030 + 11871 mRNA_3503 0.50 +0.2
253,149 + 11871 mRNA_3503 0.55 -2.5
253,279 + 11871 mRNA_3503 0.60 +0.4
253,586 + 11871 mRNA_3503 0.74 -0.8
253,767 + 11871 mRNA_3503 0.81 -3.2
253,864 - 11871 mRNA_3503 0.85 +0.1
254,176 - -0.1
254,200 - -2.2
254,314 + -3.4
254,320 + -2.8
254,450 - +0.5
254,542 + -0.7
254,630 - -3.1
254,645 + +0.5
254,893 - -3.2
255,001 - +0.1
255,039 + -1.2
255,048 - -0.7
255,169 - -1.7

Or see this region's nucleotide sequence