Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3563

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11931 and 11932 are separated by 616 nucleotides mRNA_3563: 11931 - Hypothetical Protein, at 61,951 to 62,967 11931 mRNA_3564: 11932 - Hypothetical Protein, at 63,584 to 64,390 11932

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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61,156 + -0.6
61,299 + -2.2
61,424 + -0.8
61,480 + -1.9
61,571 + -1.3
61,600 + -0.4
61,710 - -0.7
61,731 + +0.3
62,305 - 11931 mRNA_3563 0.35 -1.7
62,307 - 11931 mRNA_3563 0.35 -2.8
62,308 - 11931 mRNA_3563 0.35 -3.6
62,309 + 11931 mRNA_3563 0.35 -1.0
62,367 + 11931 mRNA_3563 0.41 -0.8
62,588 + 11931 mRNA_3563 0.63 -0.7
62,601 + 11931 mRNA_3563 0.64 +0.4
62,894 + -2.2
63,002 + -0.6
63,003 - -3.6
63,020 + -2.2
63,026 + -1.3
63,044 - +1.8
63,504 + +0.4
63,533 + +1.3
63,625 + -0.3
63,645 + +1.6
63,646 - -1.2
63,691 - 11932 mRNA_3564 0.13 -0.4
63,696 + 11932 mRNA_3564 0.14 -0.4
63,696 + 11932 mRNA_3564 0.14 -0.1
63,735 + 11932 mRNA_3564 0.19 -0.4
63,744 + 11932 mRNA_3564 0.20 -1.1
63,758 + 11932 mRNA_3564 0.22 -2.2
63,758 - 11932 mRNA_3564 0.22 -0.7
63,778 - 11932 mRNA_3564 0.24 -0.3
63,780 - 11932 mRNA_3564 0.24 -0.3
63,795 + 11932 mRNA_3564 0.26 -2.0
63,796 - 11932 mRNA_3564 0.26 -1.0
63,809 - 11932 mRNA_3564 0.28 -1.4
63,817 + 11932 mRNA_3564 0.29 +1.8
63,826 + 11932 mRNA_3564 0.30 -2.5
63,842 - 11932 mRNA_3564 0.32 -0.5
63,850 + 11932 mRNA_3564 0.33 -0.7
63,914 - 11932 mRNA_3564 0.41 -2.1

Or see this region's nucleotide sequence