Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3579

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11946 and 11947 are separated by 150 nucleotides mRNA_3578: 11946 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 92,960 to 93,719 11946 mRNA_3579: 11947 - K16570 TUBGCP3, GCP3 gamma-tubulin complex component 3, at 93,870 to 96,029 11947

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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92,875 + -1.4
92,876 + -0.4
92,876 + -1.9
92,879 + -1.9
92,879 + +0.0
92,886 - -1.8
93,831 + -2.0
93,919 - -2.5
96,657 + -2.9
96,941 - -0.5

Or see this region's nucleotide sequence