Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3622

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11989 and 11990 are separated by 534 nucleotides mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183,204 to 185,483 11989 mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186,018 to 188,381 11990

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
185,231 - 11989 mRNA_3621 0.89 -1.4
185,249 + 11989 mRNA_3621 0.90 -0.0
185,400 + -0.3
185,410 + -0.3
185,523 - -2.0
185,533 - -1.8
185,533 - -0.8
185,548 - -2.3
185,548 - -0.3
185,549 - -0.2
185,553 + -0.6
185,560 + -0.1
185,564 + -0.5
185,565 - -1.1
185,567 - -0.6
185,568 + -1.6
185,570 - -0.1
185,578 + -3.7
185,578 + +0.2
185,593 - -1.8
185,593 - -1.5
185,593 - -2.6
185,594 + -2.5
185,596 + -1.5
185,601 + -2.1
185,649 - -3.1
185,661 - -1.2
185,661 - -2.2
185,662 + -0.2
185,662 + -2.1
185,666 + -0.4
185,673 - -0.7
185,677 - -0.2
185,679 + -1.1
185,696 + -0.5
185,704 + +0.8
185,712 - +0.8
185,713 + +0.2
185,727 + +1.1
185,744 - -2.4
185,763 + -3.8
185,786 - -0.1
185,816 + -0.5
185,830 + -0.5
185,833 - -2.1
185,852 - -0.0
185,855 + -4.0
185,877 + -1.4
185,885 + -0.5
185,888 + -3.2
185,888 + -0.4
185,912 - -2.1
185,920 + -0.4
185,948 + +0.0
185,963 - -2.7
185,978 - -2.0
185,979 + -2.4
185,989 + -2.0
186,026 + -0.5
186,029 + -2.3
186,122 + -2.9
186,164 - -1.9
186,196 + -3.8
186,301 - 11990 mRNA_3622 0.12 -1.4
186,328 - 11990 mRNA_3622 0.13 -2.3
186,349 - 11990 mRNA_3622 0.14 -0.7
186,378 - 11990 mRNA_3622 0.15 +2.4
186,538 + 11990 mRNA_3622 0.22 -3.2
186,540 + 11990 mRNA_3622 0.22 -0.5
186,573 - 11990 mRNA_3622 0.23 -2.9
186,579 - 11990 mRNA_3622 0.24 -1.4
186,599 + 11990 mRNA_3622 0.25 -3.2
186,622 - 11990 mRNA_3622 0.26 -0.7
186,645 - 11990 mRNA_3622 0.27 -1.0
186,776 + 11990 mRNA_3622 0.32 -4.0
186,789 + 11990 mRNA_3622 0.33 +0.4
186,809 - 11990 mRNA_3622 0.33 -0.3
186,843 + 11990 mRNA_3622 0.35 +0.5
186,861 + 11990 mRNA_3622 0.36 -0.3
186,967 + 11990 mRNA_3622 0.40 -2.9
187,087 + 11990 mRNA_3622 0.45 -0.3
187,242 + 11990 mRNA_3622 0.52 -1.5
187,254 + 11990 mRNA_3622 0.52 -1.2
187,358 + 11990 mRNA_3622 0.57 +0.6
187,371 + 11990 mRNA_3622 0.57 -1.4
187,614 - 11990 mRNA_3622 0.68 -0.6
187,650 + 11990 mRNA_3622 0.69 -0.6
187,773 + 11990 mRNA_3622 0.74 -0.4
187,802 - 11990 mRNA_3622 0.75 +0.6
187,806 - 11990 mRNA_3622 0.76 +0.1
187,845 + 11990 mRNA_3622 0.77 -0.4
187,908 - 11990 mRNA_3622 0.80 +1.4
187,911 + 11990 mRNA_3622 0.80 +0.1
188,228 - -1.0
188,425 + +0.3
188,463 + -4.0
188,486 - -0.4
188,500 + -2.0
188,508 - -0.1
188,523 + -2.1
188,546 + -0.7
188,548 + -1.2
188,549 - -2.5
188,552 + -0.1
188,553 + +2.0
188,556 - +2.8
188,557 + -0.6
188,559 - -0.6
188,570 - -0.5
188,570 - -1.0
188,572 + -0.5
188,576 - -3.1
188,591 + +0.0
188,592 - -0.5
188,593 + -1.2
188,605 + -2.0
188,612 + -0.3
188,704 - -1.3
188,705 - -2.1
188,708 - -1.4
188,709 + -1.1
188,717 + +0.0
188,718 - -0.2
188,721 + -0.1
188,721 + -3.0
188,724 - -1.0
188,725 - -0.7
188,725 - -0.5
188,730 - -3.6
188,731 + -2.6
188,732 + -1.3
188,738 + -1.4
188,749 - -2.6
188,753 + -1.2
188,782 - -0.8
188,782 - -0.6
188,784 - -1.2
188,786 + +0.1
188,791 - -0.2
188,791 + -2.1
188,803 - -3.7
188,805 - -0.9
188,809 - -0.1
188,814 - -2.7
188,815 - -1.4
188,815 - -1.7
188,816 - -1.1
188,816 - -1.9
188,816 + +0.0
188,824 + +0.6
188,831 - +1.3
188,833 + -2.8
188,836 + -0.5
188,837 - -1.4
188,841 + +0.6
188,841 - -1.3
188,844 + -0.3
188,846 + +1.5
188,862 - -2.3
188,864 + -1.4
188,872 + +0.1
188,875 - +0.7
188,876 + -0.1
188,878 + -2.0
188,887 - +0.6
188,896 - -2.3
188,896 - +1.2
188,897 - -1.0
188,903 + -3.4
188,903 + -2.4
188,906 + -0.2
188,907 + -0.1
188,908 - -2.5
188,914 + -1.1
188,921 - -2.9
188,922 - -2.1
188,934 - -1.2
188,936 - -2.5
188,936 - -2.1
188,942 - -3.0
188,943 - -2.9
188,951 - -0.8
188,962 - -1.6
189,019 + -2.6
189,075 - +0.6
189,080 - -0.8
189,082 - -0.6
189,082 + -1.8
189,100 - -3.9
189,102 + -0.9
189,106 - -1.0
189,119 + +1.3
189,119 + +0.4
189,119 - -1.3
189,124 - -2.5
189,125 + -0.7
189,125 + +0.4
189,127 + -2.2
189,132 + -1.4
189,134 + -1.6
189,158 - -3.5
189,171 + -2.0
189,171 - -2.0
189,184 - -1.2
189,186 - -1.7
189,186 - -1.6
189,187 + -1.3
189,189 + -2.4
189,190 + -0.4
189,221 + -2.3
189,222 - +0.2
189,223 + +0.7
189,232 + -0.5
189,252 - -0.3
189,260 - -3.8
189,272 - +0.4
189,292 - -3.2
189,296 - -1.9
189,304 - -1.9
189,371 + -2.8

Or see this region's nucleotide sequence