Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3624

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11991 and 11992 are separated by 689 nucleotides11992 and 11993 are separated by 251 nucleotides mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190,258 to 192,689 11991 mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193,379 to 194,590 11992 mRNA_3625: 11993 - K01176 AMY, amyA, malS alpha-amylase, at 194,842 to 197,624 11993

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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192,665 - -0.7
192,814 + -2.0
192,873 + -2.0
192,949 - -2.0
192,960 + +1.3
192,977 - -0.4
192,985 - -0.9
193,114 + -2.3
193,124 + -1.7
193,126 + -0.7
193,139 + -1.8
193,699 - 11992 mRNA_3624 0.26 -0.9
194,119 + 11992 mRNA_3624 0.61 -2.1
194,560 - -0.1
194,562 + -1.3
194,752 + -2.3
194,755 - -2.4
195,196 + 11993 mRNA_3625 0.13 -3.8
195,482 + 11993 mRNA_3625 0.23 -0.5

Or see this region's nucleotide sequence