Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3645

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12012 and 12013 are separated by 990 nucleotides mRNA_3644: 12012 - Hypothetical Protein, at 242,655 to 243,950 12012 mRNA_3645: 12013 - K14439 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1, at 244,941 to 247,626 12013

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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244,103 + -2.2
244,141 - -0.8
244,152 + -0.8
244,171 - -2.0
244,285 + -2.5
244,311 + -2.0
244,327 + +0.6
244,411 + -1.9
244,423 + -1.9
244,435 - -3.2
244,443 + -3.0
244,451 + +1.9
244,576 - -3.6
244,580 + +1.9
244,587 + -1.7
244,591 - -0.8
244,593 - -0.4
244,697 - -0.8
244,722 + -0.7
244,731 + -0.4
244,734 - -2.0
244,742 + -0.2
244,753 + -1.4
244,759 + +0.3
244,763 - +0.4
244,780 + -1.0
244,784 - -2.7
244,785 + +1.2
244,886 + +0.6
244,898 - +0.0
244,949 + -0.0
245,066 + -0.6
248,336 + +1.4

Or see this region's nucleotide sequence