Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3663

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12030 and 12031 are separated by 177 nucleotides12031 and 12032 are separated by 901 nucleotides mRNA_3662: 12030 - KOG2768 Translation initiation factor 2, beta subunit (eIF-2beta), at 286,767 to 288,003 12030 mRNA_3663: 12031 - K01738 cysK cysteine synthase A, at 288,181 to 289,942 12031 mRNA_3664: 12032 - K15111 SLC25A26 solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26, at 290,844 to 292,094 12032

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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287,211 + 12030 mRNA_3662 0.36 +0.2
287,221 - 12030 mRNA_3662 0.37 -2.4
287,222 + 12030 mRNA_3662 0.37 -2.2
287,231 - 12030 mRNA_3662 0.38 -1.2
287,237 - 12030 mRNA_3662 0.38 -1.0
287,239 + 12030 mRNA_3662 0.38 -0.0
287,246 + 12030 mRNA_3662 0.39 -1.4
287,247 - 12030 mRNA_3662 0.39 +0.1
287,248 + 12030 mRNA_3662 0.39 -3.2
287,248 - 12030 mRNA_3662 0.39 -1.2
287,254 + 12030 mRNA_3662 0.39 -1.8
287,272 + 12030 mRNA_3662 0.41 -0.8
287,308 - 12030 mRNA_3662 0.44 -3.0
287,334 + 12030 mRNA_3662 0.46 -3.1
287,346 + 12030 mRNA_3662 0.47 -1.5
287,389 + 12030 mRNA_3662 0.50 -0.8
287,403 - 12030 mRNA_3662 0.51 -1.3
287,408 + 12030 mRNA_3662 0.52 -0.8
287,410 + 12030 mRNA_3662 0.52 -0.2
287,412 - 12030 mRNA_3662 0.52 -1.9
287,419 + 12030 mRNA_3662 0.53 -0.1
287,421 + 12030 mRNA_3662 0.53 +0.4
287,429 - 12030 mRNA_3662 0.54 -2.2
287,431 - 12030 mRNA_3662 0.54 -3.5
287,433 - 12030 mRNA_3662 0.54 -3.3
287,446 - 12030 mRNA_3662 0.55 -1.1
287,478 + 12030 mRNA_3662 0.57 -1.7
287,507 - 12030 mRNA_3662 0.60 -1.5
287,543 - 12030 mRNA_3662 0.63 +0.5
287,546 + 12030 mRNA_3662 0.63 -1.5
287,579 - 12030 mRNA_3662 0.66 -0.2
287,684 - 12030 mRNA_3662 0.74 -1.9
287,687 + 12030 mRNA_3662 0.74 -1.3
287,706 - 12030 mRNA_3662 0.76 -2.6
287,712 - 12030 mRNA_3662 0.76 -1.7
287,723 - 12030 mRNA_3662 0.77 -1.4
287,731 - 12030 mRNA_3662 0.78 -0.0
287,732 - 12030 mRNA_3662 0.78 -1.2
287,738 - 12030 mRNA_3662 0.78 -0.2
287,760 - 12030 mRNA_3662 0.80 -2.0
287,779 - 12030 mRNA_3662 0.82 +0.1
287,803 - 12030 mRNA_3662 0.84 -2.4
288,237 - +0.8
288,491 - 12031 mRNA_3663 0.18 -3.7
288,966 - 12031 mRNA_3663 0.45 +1.0
288,976 + 12031 mRNA_3663 0.45 -0.3
289,238 + 12031 mRNA_3663 0.60 -3.0
289,525 - 12031 mRNA_3663 0.76 -1.2
289,682 + 12031 mRNA_3663 0.85 -2.2
289,687 - 12031 mRNA_3663 0.85 +0.2
289,841 - -0.2
289,841 - -2.9
289,849 - -0.5
289,859 + -0.7
289,860 + -1.0
290,013 + -2.6
290,018 + -0.5
290,028 - -0.5
290,166 - -0.4
290,293 + -1.4
290,589 + +0.8
290,613 - -2.1
290,869 - +0.3
290,880 + -2.8
290,881 + +0.5
290,923 - -2.9

Or see this region's nucleotide sequence