Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3694

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12062 and 12063 are separated by 154 nucleotides mRNA_3694: 12062 - K18334 fucD L-fuconate dehydratase, at 376,601 to 378,918 12062 mRNA_3695: 12063 - KOG1730 Thioredoxin-like protein, at 379,073 to 379,916 12063

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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376,431 - -2.5
376,439 - -2.5
376,459 - -3.9
376,523 + -0.7
376,647 + +0.1
376,748 - -2.7
376,935 - 12062 mRNA_3694 0.14 +0.2
377,061 - 12062 mRNA_3694 0.20 -2.0
377,079 - 12062 mRNA_3694 0.21 -2.8
377,085 + 12062 mRNA_3694 0.21 -1.4
377,583 - 12062 mRNA_3694 0.42 -2.9
377,645 - 12062 mRNA_3694 0.45 +0.4
377,662 + 12062 mRNA_3694 0.46 -3.3
378,518 + 12062 mRNA_3694 0.83 +0.0
378,660 - 12062 mRNA_3694 0.89 -1.7
378,667 + 12062 mRNA_3694 0.89 -3.0
379,516 + 12063 mRNA_3695 0.52 -0.9
379,681 + 12063 mRNA_3695 0.72 -3.1
379,710 + 12063 mRNA_3695 0.75 -0.7
379,723 + 12063 mRNA_3695 0.77 -2.0
379,823 + 12063 mRNA_3695 0.89 -2.7

Or see this region's nucleotide sequence