Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3732

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12100 and 12101 are separated by 405 nucleotides mRNA_3732: 12100 - K02541 MCM3 DNA replication licensing factor MCM3, at 453,754 to 456,999 12100 mRNA_3733: 12101 - BLAST Hybrid signal transduction histidine kinase B [Leucoa..., at 457,405 to 460,471 12101

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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453,266 - -1.3
453,268 + -3.5
453,269 - -1.4
453,280 + -0.9
453,286 + -0.1
453,392 + -1.0
453,411 - -2.1
453,427 - -1.6
453,432 - -0.3
453,554 - -3.6
453,633 + -1.6
453,697 - -2.6
453,707 - -2.2
453,731 - -0.8
457,115 + -2.6
457,142 - -3.9
457,155 + -0.4
457,158 - -0.4
457,170 + -0.5
457,174 - -0.9
457,175 + -1.9
457,175 - -4.0
457,178 - -1.2
457,307 - -1.7
457,330 - -1.5
457,782 + 12101 mRNA_3733 0.12 +0.2

Or see this region's nucleotide sequence