Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3740

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12107 and 12108 are separated by 313 nucleotides12108 and 12109 overlap by 8 nucleotides mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468,433 to 469,585 12107 mRNA_3740: 12108 - Hypothetical Protein, at 469,899 to 470,347 12108 mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470,340 to 473,925 12109

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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469,126 + 12107 mRNA_3739 0.60 -3.0
469,139 + 12107 mRNA_3739 0.61 +0.3
469,269 - 12107 mRNA_3739 0.73 -3.6
469,290 + 12107 mRNA_3739 0.74 -0.7
469,543 + -0.7
469,589 - +0.3
469,597 + -2.4
469,652 + -0.9
469,722 + -0.1
469,724 - -1.0
469,742 + -1.7
469,742 + -1.3
469,742 + -1.7
469,753 + -2.3
469,823 + +0.3
469,825 + -1.0
469,849 - -2.3
469,877 + +0.7
469,878 + -1.7
469,881 - +0.7
469,881 - -2.4
469,892 + -0.9
469,895 + -2.7
469,897 + -0.1
469,939 + -0.1
469,962 - 12108 mRNA_3740 0.14 -3.7
469,963 - 12108 mRNA_3740 0.14 -1.1
469,963 - 12108 mRNA_3740 0.14 -1.5
469,965 + 12108 mRNA_3740 0.15 -0.5
469,965 - 12108 mRNA_3740 0.15 +0.2
469,967 - 12108 mRNA_3740 0.15 -2.0
469,968 + 12108 mRNA_3740 0.15 +1.4
469,968 - 12108 mRNA_3740 0.15 -1.4
469,970 + 12108 mRNA_3740 0.16 -1.3
469,984 - 12108 mRNA_3740 0.19 -1.1
469,998 + 12108 mRNA_3740 0.22 -2.2
470,000 + 12108 mRNA_3740 0.22 -3.0
470,002 - 12108 mRNA_3740 0.23 -0.4
470,002 - 12108 mRNA_3740 0.23 -2.3
470,018 - 12108 mRNA_3740 0.27 +0.6
470,041 + 12108 mRNA_3740 0.32 -4.4
470,052 - 12108 mRNA_3740 0.34 +0.2
470,064 - 12108 mRNA_3740 0.37 -2.8
470,121 + 12108 mRNA_3740 0.49 -0.8
470,192 + 12108 mRNA_3740 0.65 -0.9
470,250 + 12108 mRNA_3740 0.78 -1.0
470,259 + 12108 mRNA_3740 0.80 -1.6
470,291 + 12108 mRNA_3740 0.87 -1.6
470,325 + -0.1
470,430 - -0.5
470,478 - -2.5
470,716 - 12109 mRNA_3741 0.10 -1.1
470,861 - 12109 mRNA_3741 0.15 -0.8
471,193 + 12109 mRNA_3741 0.24 -1.9
471,334 - 12109 mRNA_3741 0.28 -1.0

Or see this region's nucleotide sequence