Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3753

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12120 and 12121 are separated by 176 nucleotides12121 and 12122 are separated by 319 nucleotides mRNA_3752: 12120 - HMMPfam-GDP-fucose protein O-fucosyltransferase-PF10250, at 503,579 to 505,478 12120 mRNA_3753: 12121 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 505,655 to 508,720 12121 mRNA_3754: 12122 - K01641 E2.3.3.10 hydroxymethylglutaryl-CoA synthase, at 509,040 to 510,998 12122

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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504,708 + 12120 mRNA_3752 0.59 -0.8
504,779 - 12120 mRNA_3752 0.63 -0.0
504,806 + 12120 mRNA_3752 0.65 -1.9
504,861 - 12120 mRNA_3752 0.67 -0.9
505,449 + -1.9
505,736 - -0.1
505,880 - -3.1
506,282 + 12121 mRNA_3753 0.20 -1.7
506,299 - 12121 mRNA_3753 0.21 -3.4
506,301 - 12121 mRNA_3753 0.21 -1.8
506,745 + 12121 mRNA_3753 0.36 -1.1
506,854 + 12121 mRNA_3753 0.39 -2.2
506,858 - 12121 mRNA_3753 0.39 -0.4
506,935 + 12121 mRNA_3753 0.42 -2.7
507,015 - 12121 mRNA_3753 0.44 -2.0
507,156 + 12121 mRNA_3753 0.49 -1.0
507,171 + 12121 mRNA_3753 0.49 -2.4
507,605 - 12121 mRNA_3753 0.64 -2.0
507,921 + 12121 mRNA_3753 0.74 -2.7
508,037 - 12121 mRNA_3753 0.78 -1.6
508,187 - 12121 mRNA_3753 0.83 -0.9
508,197 + 12121 mRNA_3753 0.83 +1.2
508,205 + 12121 mRNA_3753 0.83 -2.6
508,209 + 12121 mRNA_3753 0.83 -0.3
508,217 + 12121 mRNA_3753 0.84 -0.3
508,334 + 12121 mRNA_3753 0.87 -4.1
508,337 - 12121 mRNA_3753 0.87 -2.4
508,339 - 12121 mRNA_3753 0.88 -1.4
508,352 + 12121 mRNA_3753 0.88 -2.3
508,451 + -5.0
508,475 - -3.6
508,488 - -4.0
508,522 + +1.7
508,624 + -0.2
508,639 - -1.4
508,642 - -0.9
508,648 - -1.8
508,739 + -4.4
508,776 - -2.0
508,778 - -0.9
508,785 - -0.6
508,934 + -0.5
508,948 + -1.4
509,099 + -0.5

Or see this region's nucleotide sequence