Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3796

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12163 and 12164 are separated by 124 nucleotides12164 and 12165 are separated by 180 nucleotides mRNA_3795: 12163 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 597,927 to 600,358 12163 mRNA_3796: 12164 - Hypothetical Protein, at 600,483 to 601,004 12164 mRNA_3797: 12165 - Hypothetical Protein, at 601,185 to 602,135 12165

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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599,569 + 12163 mRNA_3795 0.68 -0.6
599,941 - 12163 mRNA_3795 0.83 -1.4
600,315 + +1.1
600,494 + -0.7
600,723 - 12164 mRNA_3796 0.46 -0.9
600,732 - 12164 mRNA_3796 0.48 +0.8
600,765 + 12164 mRNA_3796 0.54 -0.0
601,039 - -1.0
601,044 + -0.7
601,045 + +1.9
601,053 - +0.9
601,061 + -1.2
601,064 + -2.2
601,071 + +0.1
601,318 + 12165 mRNA_3797 0.14 -2.1
601,338 - 12165 mRNA_3797 0.16 -1.8
601,349 + 12165 mRNA_3797 0.17 -0.3
601,761 + 12165 mRNA_3797 0.61 +0.1

Or see this region's nucleotide sequence