Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3827

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12195 and 12196 are separated by 640 nucleotides mRNA_3827: 12195 - Hypothetical Protein, at 676,929 to 682,172 12195 mRNA_3828: 12196 - Hypothetical Protein, at 682,813 to 683,280 12196

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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675,979 + -0.1
675,993 - -2.5
676,015 + -4.5
676,035 - -1.2
676,076 + -2.6
676,156 + +1.0
676,183 + -2.0
676,187 + -1.1
676,484 + -1.7
677,057 - -0.3
677,625 - 12195 mRNA_3827 0.13 -0.6
677,996 + 12195 mRNA_3827 0.20 -2.1
678,759 + 12195 mRNA_3827 0.35 -0.7
679,502 - 12195 mRNA_3827 0.49 -0.3
679,759 + 12195 mRNA_3827 0.54 -1.9
679,771 + 12195 mRNA_3827 0.54 -0.9
680,198 - 12195 mRNA_3827 0.62 -1.5
680,215 - 12195 mRNA_3827 0.63 -0.6
680,395 + 12195 mRNA_3827 0.66 -0.8
680,729 - 12195 mRNA_3827 0.72 -1.7
680,788 + 12195 mRNA_3827 0.74 -1.2
680,888 - 12195 mRNA_3827 0.75 -1.6
680,900 - 12195 mRNA_3827 0.76 -0.9
681,525 - 12195 mRNA_3827 0.88 -0.9
681,538 - 12195 mRNA_3827 0.88 +2.0
681,681 - -2.0
682,106 - -1.5
682,363 - +0.2
682,364 + +1.2
682,367 - -1.1
682,382 + -1.9
682,520 - -0.8
682,529 + -2.9
682,541 + +0.3
682,543 - -1.0
682,657 + -1.6
682,675 - -0.5
682,681 + -1.6
682,705 - -1.5
682,706 + +1.8
682,709 + -0.1
682,816 - -2.7
682,818 - -3.1
682,831 + -1.4
682,834 + -0.3
682,876 + 12196 mRNA_3828 0.13 +1.0
682,969 - 12196 mRNA_3828 0.33 -2.3
682,969 - 12196 mRNA_3828 0.33 -2.0
683,108 - 12196 mRNA_3828 0.63 -0.4
683,128 - 12196 mRNA_3828 0.67 -3.8
683,139 - 12196 mRNA_3828 0.70 -2.0
683,143 - 12196 mRNA_3828 0.71 -0.5
683,149 + 12196 mRNA_3828 0.72 -0.8
683,152 - 12196 mRNA_3828 0.72 -0.0
683,156 + 12196 mRNA_3828 0.73 -0.0
683,166 - 12196 mRNA_3828 0.75 -1.3
683,166 - 12196 mRNA_3828 0.75 -1.8
683,167 - 12196 mRNA_3828 0.76 -0.2
683,168 + 12196 mRNA_3828 0.76 -0.2
683,170 - 12196 mRNA_3828 0.76 -3.4
683,172 + 12196 mRNA_3828 0.77 -0.6

Or see this region's nucleotide sequence