Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3839

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12206 and 12207 are separated by 164 nucleotides12207 and 12208 are separated by 295 nucleotides mRNA_3838: 12206 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 706,826 to 713,191 12206 mRNA_3839: 12207 - BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh..., at 713,356 to 714,077 12207 mRNA_3840: 12208 - K18849 BMT2 25S rRNA (adenine2142-N1)-methyltransferase, at 714,373 to 715,825 12208

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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712,423 - 12206 mRNA_3838 0.88 -2.1
712,660 + -1.5
712,686 - -2.6
712,990 + +0.1
713,000 - +0.8
713,141 - -1.3
713,311 + +1.4
713,424 - +0.2
713,568 + 12207 mRNA_3839 0.29 -3.6
713,577 - 12207 mRNA_3839 0.31 +0.0
714,021 + -1.9
714,033 + -2.8
714,091 - -0.2
714,301 - -3.1
714,740 + 12208 mRNA_3840 0.25 -1.0
715,003 + 12208 mRNA_3840 0.43 -0.9

Or see this region's nucleotide sequence