Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3849

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12216 and 12217 are separated by 360 nucleotides mRNA_3848: 12216 - KOG1817 Ribonuclease, at 733,873 to 734,892 12216 mRNA_3849: 12217 - Hypothetical Protein, at 735,253 to 736,177 12217

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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734,261 - 12216 mRNA_3848 0.38 -1.5
734,439 - 12216 mRNA_3848 0.55 -0.7
734,683 + 12216 mRNA_3848 0.79 -1.7
734,797 + -3.4
734,841 + -1.6
734,982 - -1.2
735,148 + -0.6
735,170 - -3.0
735,180 + -2.6
735,237 - -2.1
735,274 + -2.1
735,304 - -2.3
735,310 + -0.5
735,312 + -2.6
735,314 + -3.3
735,317 - -0.8
735,327 - +0.4
735,370 - 12217 mRNA_3849 0.13 -0.6
735,396 - 12217 mRNA_3849 0.15 +0.3
735,438 - 12217 mRNA_3849 0.20 -0.1
735,446 + 12217 mRNA_3849 0.21 -2.4
735,456 + 12217 mRNA_3849 0.22 -1.7
735,500 + 12217 mRNA_3849 0.27 -1.8
735,518 - 12217 mRNA_3849 0.29 -2.7
735,521 + 12217 mRNA_3849 0.29 -0.4
735,568 + 12217 mRNA_3849 0.34 -0.1
735,590 - 12217 mRNA_3849 0.36 -1.0
735,605 + 12217 mRNA_3849 0.38 -0.9
735,612 + 12217 mRNA_3849 0.39 -0.2
735,626 + 12217 mRNA_3849 0.40 +0.4
735,668 + 12217 mRNA_3849 0.45 -3.3
735,701 + 12217 mRNA_3849 0.48 -1.8
735,715 + 12217 mRNA_3849 0.50 -0.3
735,794 + 12217 mRNA_3849 0.58 +0.0
735,815 - 12217 mRNA_3849 0.61 -2.6
735,862 - 12217 mRNA_3849 0.66 -0.9
735,900 + 12217 mRNA_3849 0.70 -1.1
735,901 + 12217 mRNA_3849 0.70 -1.0
735,906 - 12217 mRNA_3849 0.71 -1.4
735,925 - 12217 mRNA_3849 0.73 -2.3
735,969 - 12217 mRNA_3849 0.77 -1.9
735,999 - 12217 mRNA_3849 0.81 -2.5
736,031 + 12217 mRNA_3849 0.84 +0.0
736,042 - 12217 mRNA_3849 0.85 -1.3
736,082 + 12217 mRNA_3849 0.90 +0.1
736,101 + -1.3
736,224 + -1.5
736,231 - -2.5
736,346 - +0.5
736,370 + -0.2
736,390 + -2.0
736,818 + -0.4
736,953 + -1.0
736,966 - -2.1
737,098 + -1.0
737,106 + +0.5
737,111 + -1.4
737,129 + -4.2
737,131 + -0.3

Or see this region's nucleotide sequence